RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 HLA-DQB2P05538 268 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 CTNNA1P35221 906 aaKnown RBP14.29□□□□□ -0.12
VAMP4-203ENST00000474047 MARCKSL1P49006 195 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 BNIP3Q12983 259 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 ARHGEF7Q14155 803 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 DENND2CQ68D51 928 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 DBX2Q6ZNG2 339 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 USP45Q70EL2 814 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 DPPA4Q7L190 304 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 PEX26Q7Z412 305 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 TFB1MQ8WVM0 346 aaKnown RBP14.29□□□□□ -0.12
VAMP4-203ENST00000474047 NSMCE3Q96MG7 304 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 HEMGNQ9BXL5 484 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 B4GALT6Q9UBX8 382 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 BTBD3Q9Y2F9 522 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 hCG_1818297A0A087WSY0 165 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 CFAP69A5D8W1 941 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 H3BM21 787 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 SDC3O75056 442 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 EPHA8P29322 1005 aaPredicted RBP14.28□□□□□ -0.12
VAMP4-203ENST00000474047 VIPR1P32241 457 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 RWDD2BP57060 319 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 COPS2P61201 443 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 IFI35P80217 286 aaPredicted RBP14.28□□□□□ -0.12
VAMP4-203ENST00000474047 FOXC1Q12948 553 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 IRF4Q15306 451 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 ZNF542PQ5EBM4 170 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 LIPIQ6XZB0 460 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 B4GALNT4Q76KP1 1039 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 EID2Q8N6I1 236 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 UBL4BQ8N7F7 174 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 CCDC112Q8NEF3 446 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 SAP25Q8TEE9 199 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 HAUS1Q96CS2 278 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 AGAP3Q96P47 875 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 CEP41Q9BYV8 373 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 TSGA10Q9BZW7 698 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 MBNL1Q9NR56 388 aaKnown RBP14.28□□□□□ -0.12
VAMP4-203ENST00000474047 SAE1Q9UBE0 346 aaPredicted RBP14.28□□□□□ -0.12
VAMP4-203ENST00000474047 FTSJ1Q9UET6 329 aa14.28□□□□□ -0.12
VAMP4-203ENST00000474047 APOBEC2Q9Y235 224 aaKnown RBP14.28□□□□□ -0.12
VAMP4-203ENST00000474047 SPTY2D1-AS1A0A0U1RR47 76 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 GRID2IPA4D2P6 1211 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 RECQL5O94762 991 aaPredicted RBP14.27□□□□□ -0.12
VAMP4-203ENST00000474047 PCCBP05166 539 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 CTPS1P17812 591 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 CTNNA2P26232 953 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 IGFALSP35858 605 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 CD86P42081 329 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 YPEL5P62699 121 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 SHBQ15464 509 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 TAZQ16635 292 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 ZC3H18Q86VM9 953 aaKnown RBP14.27□□□□□ -0.12
VAMP4-203ENST00000474047 TP53I13Q8NBR0 393 aaPredicted RBP14.27□□□□□ -0.12
VAMP4-203ENST00000474047 IFT43Q96FT9 208 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 OLFM3Q96PB7 478 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 IL12RB2Q99665 862 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 FERMT1Q9BQL6 677 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 TRIM10Q9UDY6 481 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 CHKBQ9Y259 395 aa14.27□□□□□ -0.12
VAMP4-203ENST00000474047 TOR1BO14657 336 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 ARHGAP6O43182 974 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 KRT86O43790 486 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 CBFA2T3O75081 653 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 LDOC1O95751 146 aaPredicted RBP14.27□□□□□ -0.13
VAMP4-203ENST00000474047 HTR1BP28222 390 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 PFN3P60673 137 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 HNRNPKP61978 463 aaKnown RBP eCLIP14.27□□□□□ -0.13
VAMP4-203ENST00000474047 RALGDSQ12967 914 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 ZBTB17Q13105 803 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 INPP5AQ14642 412 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 PPP2R5EQ16537 467 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 WSCD2Q2TBF2 565 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 CCDC157Q569K6 752 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 ALG1LQ6GMV1 187 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 NT5DC3Q86UY8 548 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 PARGQ86W56 976 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 SLC22A18ASQ8N1D0 253 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 SPOCK2Q92563 424 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 SCRN2Q96FV2 425 aa14.27□□□□□ -0.13
VAMP4-203ENST00000474047 TDRD6O60522 2096 aaKnown RBP14.26□□□□□ -0.13
VAMP4-203ENST00000474047 GOLGA6CA6NDK9 693 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 GOLGA6BA6NDN3 693 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 GOLGA6L3A6NEY3 463 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 NEMP2A6NFY4 417 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 H7C0C1 242 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 MTSS1O43312 755 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 TNFSF14O43557 240 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 PDHA1P08559 390 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 GOLGA6DP0CG33 693 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 PECAM1P16284 738 aaPredicted RBP14.26□□□□□ -0.13
VAMP4-203ENST00000474047 ATP5OP48047 213 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 NIPAL4Q0D2K0 466 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 FZD2Q14332 565 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 FAXCQ5TGI0 409 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 RNF10Q8N5U6 811 aaKnown RBP14.26□□□□□ -0.13
VAMP4-203ENST00000474047 LRRC57Q8N9N7 239 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 LPCAT1Q8NF37 534 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 ATL2Q8NHH9 583 aa14.26□□□□□ -0.13
VAMP4-203ENST00000474047 ARRDC2Q8TBH0 407 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms