RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 KCND3Q9UK17 655 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 VANGL2Q9ULK5 521 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 GPR34Q9UPC5 381 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 SMC3Q9UQE7 1217 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 TLR6Q9Y2C9 796 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 COQ6Q9Y2Z9 468 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 B3GALT1Q9Y5Z6 326 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 MRPS18BQ9Y676 258 aaKnown RBP5.36□□□□□ -1.55
PTPN4-209ENST00000469511 OTOGQ6ZRI0 2925 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 MTORP42345 2549 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 ZGRF1Q86YA3 2104 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 SYNJ2BP-COX16A0A087WUM0 186 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 TYW5A2RUC4 315 aaKnown RBP5.35□□□□□ -1.55
PTPN4-209ENST00000469511 KCNU1A8MYU2 1149 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.35□□□□□ -1.55
PTPN4-209ENST00000469511 F5H5T6 163 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 FPGTO14772 594 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 POLR2DO15514 142 aaKnown RBP5.35□□□□□ -1.55
PTPN4-209ENST00000469511 TRUB2O95900 331 aaKnown RBP5.35□□□□□ -1.55
PTPN4-209ENST00000469511 CD160O95971 181 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 IGLV3-25P01717 112 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 F8A1P23610 371 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 ITGB7P26010 798 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 ARNTP27540 789 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 ARL4DP49703 201 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 OXCT1P55809 520 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 OR1D5P58170 312 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 RPS21P63220 83 aaKnown RBP5.35□□□□□ -1.55
PTPN4-209ENST00000469511 B4GALNT1Q00973 533 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 SULT2A1Q06520 285 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 MRPL49Q13405 166 aaKnown RBP5.35□□□□□ -1.55
PTPN4-209ENST00000469511 PTK2BQ14289 1009 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 SETDB1Q15047 1291 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 CBWD6Q4V339 395 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 CBWD3Q5JTY5 395 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 CBWD5Q5RIA9 395 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 ESRP1Q6NXG1 681 aaKnown RBP5.35□□□□□ -1.55
PTPN4-209ENST00000469511 FOXR2Q6PJQ5 311 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 LCLAT1Q6UWP7 414 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 TMEM135Q86UB9 458 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 SULF2Q8IWU5 870 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 CACNA2D3Q8IZS8 1091 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 SCML4Q8N228 414 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 SVOPQ8N4V2 548 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 ARL10Q8N8L6 244 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 ZNF557Q8N988 423 aaPredicted RBP5.35□□□□□ -1.55
PTPN4-209ENST00000469511 ATP11CQ8NB49 1132 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 TP53I13Q8NBR0 393 aaPredicted RBP5.35□□□□□ -1.55
PTPN4-209ENST00000469511 OR7D4Q8NG98 312 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 OR6K2Q8NGY2 324 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 WDR48Q8TAF3 677 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 IRGQQ8WZA9 623 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 FEM1CQ96JP0 617 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 LENG8Q96PV6 779 aaPredicted RBP5.35□□□□□ -1.55
PTPN4-209ENST00000469511 NUDT22Q9BRQ3 303 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 HDAC8Q9BY41 377 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 EDEM3Q9BZQ6 932 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 SPRY4Q9C004 299 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 MRPL40Q9NQ50 206 aaKnown RBP5.35□□□□□ -1.55
PTPN4-209ENST00000469511 CASS4Q9NQ75 786 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 OCIAD1Q9NX40 245 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 RAB20Q9NX57 234 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 NCKIPSDQ9NZQ3 722 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 COX16Q9P0S2 106 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 TMEM9Q9P0T7 183 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 CGNQ9P2M7 1197 aaKnown RBP5.35□□□□□ -1.55
PTPN4-209ENST00000469511 SLC25A13Q9UJS0 675 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 TUBD1Q9UJT1 453 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 VPS28Q9UK41 221 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 MAPK8IP1Q9UQF2 711 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 HS3ST2Q9Y278 367 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 HS3ST4Q9Y661 456 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 APCP25054 2843 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 CCDC88CQ9P219 2028 aa5.35□□□□□ -1.55
PTPN4-209ENST00000469511 IGHV5-10-1A0A0J9YXX1 117 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 PVALEFA0A1B0GWK0 134 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 TCAF2A6NFQ2 919 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 STMND1H3BQB6 276 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 PDXKO00764 312 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 RAD1O60671 282 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 ZMPSTE24O75844 475 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 VDRP11473 427 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 TFE3P19532 575 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-209ENST00000469511 ELAVL4P26378 380 aaKnown RBP5.34□□□□□ -1.55
PTPN4-209ENST00000469511 L1CAMP32004 1257 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 NEK3P51956 506 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 HK3P52790 923 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 THOP1P52888 689 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 MAZP56270 477 aaKnown RBP5.34□□□□□ -1.55
PTPN4-209ENST00000469511 NUCB2P80303 420 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 PPARDQ03181 441 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 CDC20Q12834 499 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 KLRB1Q12918 225 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 CUL2Q13617 745 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 SLC12A1Q13621 1099 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 AUHQ13825 339 aaKnown RBP5.34□□□□□ -1.55
PTPN4-209ENST00000469511 LRRC14Q15048 493 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 AMZ1Q400G9 498 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 NADK2Q4G0N4 442 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 LACTB2Q53H82 288 aaPredicted RBP5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms