RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 YIPF3Q9GZM5 350 aa8.99□□□□□ -0.97
SYNE1-217ENST00000466159 VCXQ9H320 206 aa8.99□□□□□ -0.97
SYNE1-217ENST00000466159 MFSD1Q9H3U5 465 aa8.99□□□□□ -0.97
SYNE1-217ENST00000466159 ALG9Q9H6U8 611 aa8.99□□□□□ -0.97
SYNE1-217ENST00000466159 TLR8Q9NR97 1041 aaKnown RBP8.99□□□□□ -0.97
SYNE1-217ENST00000466159 PRPF19Q9UMS4 504 aaKnown RBP8.99□□□□□ -0.97
SYNE1-217ENST00000466159 MAGEA13PA6NCF6 341 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 TCAF2A6NFQ2 919 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 TRPC5OSA6NMA1 111 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 NT5C1B-RDH14C9J2C7 533 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 VNN2O95498 520 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 SLC4A1P02730 911 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 ZCCHC18P0CG32 403 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 ADSLP30566 484 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-217ENST00000466159 PBX3P40426 434 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 KCNQ1P51787 676 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 ATXN3P54252 364 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-217ENST00000466159 AQP4P55087 323 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 MS4A2Q01362 244 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 IL10RBQ08334 325 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 ART3Q13508 389 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 CEACAM7Q14002 265 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 MRPL58Q14197 206 aaKnown RBP8.98□□□□□ -0.97
SYNE1-217ENST00000466159 GALNT3Q14435 633 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 ACAP2Q15057 778 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 TRIP10Q15642 601 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 PPP1R3AQ16821 1122 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 ZNF423Q2M1K9 1284 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 PIGGQ5H8A4 983 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 RNF220Q5VTB9 566 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 KLC3Q6P597 504 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 RNF19BQ6ZMZ0 732 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 SDCCAG8Q86SQ7 713 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-217ENST00000466159 CUZD1Q86UP6 607 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 GIPC2Q8TF65 315 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 TSPAN17Q96FV3 270 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 DNAJC1Q96KC8 554 aaKnown RBP8.98□□□□□ -0.97
SYNE1-217ENST00000466159 WDR41Q9HAD4 459 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 A0A0D9SEW6 157 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 MTMR11A4FU01 709 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 UBFD1O14562 309 aaKnown RBP8.98□□□□□ -0.97
SYNE1-217ENST00000466159 IGLV3-27P01718 113 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 LYNP07948 512 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 RBP1P09455 135 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 DUSP4Q13115 394 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 GSTA3Q16772 222 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 ZNF549Q6P9A3 640 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 GK5Q6ZS86 529 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 SETD3Q86TU7 594 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-217ENST00000466159 ISCA2Q86U28 154 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 PGAM4Q8N0Y7 254 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 PELI3Q8N2H9 469 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 SNX31Q8N9S9 440 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 OR52K2Q8NGK3 314 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 OR13C4Q8NGS5 318 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 GABPB2Q8TAK5 448 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-217ENST00000466159 STON2Q8WXE9 905 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 TMA16Q96EY4 203 aaKnown RBP8.98□□□□□ -0.97
SYNE1-217ENST00000466159 IFT43Q96FT9 208 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 GLT1D1Q96MS3 346 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 SERPINI1Q99574 410 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 KLHL4Q9C0H6 718 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 EFCAB1Q9HAE3 211 aa8.98□□□□□ -0.97
SYNE1-217ENST00000466159 ABT1Q9ULW3 272 aaKnown RBP8.98□□□□□ -0.97
SYNE1-217ENST00000466159 THSD7BQ9C0I4 1608 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 CCDC189A1A4V9 331 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 TLR5O60602 858 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 RNASEH1O60930 286 aaKnown RBP8.97□□□□□ -0.97
SYNE1-217ENST00000466159 RTN3O95197 1032 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-217ENST00000466159 WISP3O95389 354 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-217ENST00000466159 MT-CO1P00395 513 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 GOT2P00505 430 aaKnown RBP8.97□□□□□ -0.97
SYNE1-217ENST00000466159 PRSS56P0CW18 603 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 TCN1P20061 433 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-217ENST00000466159 TNK2Q07912 1038 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 FLOT2Q14254 428 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 SEMA3AQ14563 771 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 HERC3Q15034 1050 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 PARP15Q460N3 678 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 CLEC6AQ6EIG7 209 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 ABI1Q8IZP0 508 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 FAM156AQ8NDB6 213 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 HMGCLL1Q8TB92 370 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 EXT2Q93063 718 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 PPP2R3CQ969Q6 453 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 PTERQ96BW5 349 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 CCDC126Q96EE4 140 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 NR1H4Q96RI1 486 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-217ENST00000466159 POLR1EQ9GZS1 481 aaKnown RBP8.97□□□□□ -0.97
SYNE1-217ENST00000466159 GSTO2Q9H4Y5 243 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 EML4Q9HC35 981 aaKnown RBP8.97□□□□□ -0.97
SYNE1-217ENST00000466159 OLA1Q9NTK5 396 aaKnown RBP8.97□□□□□ -0.97
SYNE1-217ENST00000466159 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.97□□□□□ -0.97
SYNE1-217ENST00000466159 CCDC162PA2VCL2 907 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 OR6C75A6NL08 312 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 PRAMEF11O60813 436 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 TRPA1O75762 1119 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 SUPT7LO94864 414 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 HDCP19113 662 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 TACR2P21452 398 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms