RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 MED21Q13503 144 aa12.03□□□□□ -0.48
SMPD4-213ENST00000454468 FASTKQ14296 549 aaKnown RBP12.03□□□□□ -0.48
SMPD4-213ENST00000454468 TBCCQ15814 346 aa12.03□□□□□ -0.48
SMPD4-213ENST00000454468 NRF1Q16656 503 aa12.03□□□□□ -0.48
SMPD4-213ENST00000454468 PTPRNQ16849 979 aa12.03□□□□□ -0.48
SMPD4-213ENST00000454468 FRA10AC1Q70Z53 315 aa12.03□□□□□ -0.48
SMPD4-213ENST00000454468 NET1Q7Z628 596 aaPredicted RBP12.03□□□□□ -0.48
SMPD4-213ENST00000454468 DSELQ8IZU8 1212 aa12.03□□□□□ -0.48
SMPD4-213ENST00000454468 CENPLQ8N0S6 344 aaPredicted RBP12.03□□□□□ -0.48
SMPD4-213ENST00000454468 KIFC1Q9BW19 673 aa12.03□□□□□ -0.48
SMPD4-213ENST00000454468 VCX3BQ9H321 246 aa12.03□□□□□ -0.48
SMPD4-213ENST00000454468 TRIM17Q9Y577 477 aa12.03□□□□□ -0.48
SMPD4-213ENST00000454468 BRCA1P38398 1863 aaKnown RBP12.02□□□□□ -0.48
SMPD4-213ENST00000454468 CAPN8A6NHC0 703 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 ZBBXA8MT70 800 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 CD3EAPO15446 510 aaKnown RBP12.02□□□□□ -0.48
SMPD4-213ENST00000454468 ADAMTS4O75173 837 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 INHAP05111 366 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 CKMP06732 381 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 LINC00032P0C843 101 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 ITGAXP20702 1163 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 TACR2P21452 398 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 DLG1Q12959 904 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 THEMIS2Q5TEJ8 643 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 CUZD1Q86UP6 607 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 ARHGAP18Q8N392 663 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 CEP70Q8NHQ1 597 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 CDC26Q8NHZ8 85 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 ANKRD49Q8WVL7 239 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 DEFB118Q96PH6 123 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 TSPAN18Q96SJ8 248 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 PCDHAC1Q9H158 963 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 EML4Q9HC35 981 aaKnown RBP12.02□□□□□ -0.48
SMPD4-213ENST00000454468 STX18Q9P2W9 335 aaKnown RBP12.02□□□□□ -0.48
SMPD4-213ENST00000454468 EPS15L1Q9UBC2 864 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 APPL1Q9UKG1 709 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 ANGPTL3Q9Y5C1 460 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 PCDHB9Q9Y5E1 797 aa12.02□□□□□ -0.48
SMPD4-213ENST00000454468 CCDC162PA2VCL2 907 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 ADAM12O43184 909 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 SNAP91O60641 907 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 BAIAP3O94812 1187 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 SEC24DO94855 1032 aaPredicted RBP12.02□□□□□ -0.49
SMPD4-213ENST00000454468 TRIM16O95361 564 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 SLC10A3P09131 477 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 RHOQP17081 205 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 CDH18Q13634 790 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 HNRNPDQ14103 355 aaKnown RBP12.02□□□□□ -0.49
SMPD4-213ENST00000454468 RNF219Q5W0B1 726 aaPredicted RBP12.02□□□□□ -0.49
SMPD4-213ENST00000454468 ZNF483Q8TF39 744 aaPredicted RBP12.02□□□□□ -0.49
SMPD4-213ENST00000454468 DDI1Q8WTU0 396 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 UROC1Q96N76 676 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 TMEM165Q9HC07 324 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 UBA2Q9UBT2 640 aaPredicted RBP12.02□□□□□ -0.49
SMPD4-213ENST00000454468 SNX13Q9Y5W8 968 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 SF3B1O75533 1304 aaKnown RBP eCLIP12.02□□□□□ -0.492e-10■■■■■ 48.1
SMPD4-213ENST00000454468 OTOFQ9HC10 1997 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 RGSL1A5PLK6 1076 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 IQCF5A8MTL0 148 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 PPP6CO00743 305 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 ANO7Q6IWH7 933 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 C16orf89Q6UX73 402 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 ST13P5Q8NFI4 369 aaPredicted RBP12.02□□□□□ -0.49
SMPD4-213ENST00000454468 SEPT8Q92599 483 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 EME1Q96AY2 570 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 KCNA7Q96RP8 456 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 MRPL57Q9BQC6 102 aaKnown RBP12.02□□□□□ -0.49
SMPD4-213ENST00000454468 PRKD2Q9BZL6 878 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 CRISPLD1Q9H336 500 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 CSNK1G1Q9HCP0 422 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 PFDN4Q9NQP4 134 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 TRPM5Q9NZQ8 1165 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 TLR6Q9Y2C9 796 aa12.02□□□□□ -0.49
SMPD4-213ENST00000454468 A0A088AWK7 358 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 TYW5A2RUC4 315 aaKnown RBP12.01□□□□□ -0.49
SMPD4-213ENST00000454468 CAPN14A8MX76 684 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 WFS1O76024 890 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 GJA1P17302 382 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 XRCC1P18887 633 aaPredicted RBP12.01□□□□□ -0.49
SMPD4-213ENST00000454468 CES1P23141 567 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 PIK3CGP48736 1102 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 ATXN7L2Q5T6C5 722 aaPredicted RBP12.01□□□□□ -0.49
SMPD4-213ENST00000454468 MAP3K21Q5TCX8 1036 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 KCTD11Q693B1 232 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 RAB3IL1Q8TBN0 382 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 MYEOVQ96EZ4 313 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 TMEM169Q96HH4 297 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 TTPALQ9BTX7 342 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 C1orf50Q9BV19 199 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 PRDM16Q9HAZ2 1276 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 LATS2Q9NRM7 1088 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 CATSPERZQ9NTU4 200 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 RAD54BQ9Y620 910 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 CORO1AP31146 461 aaKnown RBP12.01□□□□□ -0.49
SMPD4-213ENST00000454468 PPARGP37231 505 aaPredicted RBP12.01□□□□□ -0.49
SMPD4-213ENST00000454468 THOP1P52888 689 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 ACTR3P61158 418 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 RHOAP61586 193 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 LRRC73Q5JTD7 316 aa12.01□□□□□ -0.49
SMPD4-213ENST00000454468 BHLHA9Q7RTU4 235 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms