RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, human

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-204	ENST00000445503	MARVELD2	Q8N4S9	558 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	TCF12	Q99081	682 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	CLK4	Q9HAZ1	481 aa	Known RBP	11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	TBC1D23	Q9NUY8	699 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	ZDHHC7	Q9NXF8	308 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	KCTD3	Q9Y597	815 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	HEMK1	Q9Y5R4	338 aa	Predicted RBP	11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	LTBP4	Q8N2S1	1624 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	LY75	O60449	1722 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	QSER1	Q2KHR3	1735 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503		A0A1B0GTW7	788 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	ZNF195	O14628	629 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	KATNA1	O75449	491 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	FBXO39	Q8N4B4	442 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	DHRSX	Q8N5I4	330 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	ASB9	Q96DX5	294 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	NRBF2	Q96F24	287 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	EXOC2	Q96KP1	924 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	SPC25	Q9HBM1	224 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	CACNA2D2	Q9NY47	1150 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	CNOT6	Q9ULM6	557 aa	Known RBP	11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	TMCO1	Q9UM00	188 aa		11.92	□□□□□ -0.5
MSH6-204	ENST00000445503	NRXN2	Q9P2S2	1712 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503		H3BMM5	538 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	UBXN8	O00124	270 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	H6PD	O95479	791 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	S100B	P04271	92 aa	Predicted RBP	11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	MTHFD1	P11586	935 aa	Known RBP	11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	WARS	P23381	471 aa	Known RBP	11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	AXL	P30530	894 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	SCNN1A	P37088	669 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	YAP1	P46937	504 aa	Known RBP	11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	CLCN5	P51795	746 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	GALNT2	Q10471	571 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	ZRANB3	Q5FWF4	1079 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	GPR142	Q7Z601	462 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	KDM1B	Q8NB78	822 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	ARRDC4	Q8NCT1	418 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	VPS33A	Q96AX1	596 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	RPL10L	Q96L21	214 aa	Known RBP	11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	B3GALT6	Q96L58	329 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	SLC9A7	Q96T83	725 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	EGFL8	Q99944	293 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	ST3GAL5	Q9UNP4	418 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	COL11A2	P13942	1736 aa	Predicted RBP	11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	COL1A2	P08123	1366 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	KLHL33	A6NCF5	533 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	THPO	P40225	353 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	SULT2A1	Q06520	285 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	IKBKE	Q14164	716 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	STK32C	Q86UX6	486 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	OR2T34	Q8NGX1	318 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	OR2T3	Q8NH03	318 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	BHMT	Q93088	406 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	PPP1R10	Q96QC0	940 aa	Known RBP	11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	SLC29A1	Q99808	456 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	THUMPD3	Q9BV44	507 aa	Known RBP	11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	SPON1	Q9HCB6	807 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	HACD3	Q9P035	362 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	CDH9	Q9ULB4	789 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	COL4A5	P29400	1685 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	PRORSD1P	A6NEY8	169 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	TCAF2	A6NFQ2	919 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	LRRC14B	A6NHZ5	514 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	PARN	O95453	639 aa	Known RBP	11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	KCNA5	P22460	613 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	OR1G1	P47890	313 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	TRAF2	Q12933	501 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	LPIN1	Q14693	890 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	C11orf91	Q3C1V1	193 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	TIGD2	Q4W5G0	525 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	RAP1GAP2	Q684P5	730 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	IQSEC1	Q6DN90	963 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	CIR1	Q86X95	450 aa	Predicted RBP	11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	CLYBL	Q8N0X4	340 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	FNDC5	Q8NAU1	212 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	RIN3	Q8TB24	985 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	HSPBAP1	Q96EW2	488 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	SLC45A3	Q96JT2	553 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	PRICKLE1	Q96MT3	831 aa	Predicted RBP	11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	SEMA3C	Q99985	751 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	C17orf80	Q9BSJ5	609 aa		11.91	□□□□□ -0.5
MSH6-204	ENST00000445503	BTN3A1	O00481	513 aa		11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	AZIN1	O14977	448 aa		11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	PIP5K1B	O14986	540 aa		11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	LBP	P18428	481 aa		11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	ITGB6	P18564	788 aa		11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	ATP6V1B2	P21281	511 aa		11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	DNAJB2	P25686	324 aa		11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	GABRB3	P28472	473 aa		11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	CA8	P35219	290 aa		11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	AFF1	P51825	1210 aa	Known RBP	11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	C1QTNF8	P60827	252 aa		11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	ECT2L	Q008S8	904 aa		11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	DDR2	Q16832	855 aa		11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	SLC39A12	Q504Y0	691 aa		11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	RALGPS2	Q86X27	583 aa	Predicted RBP	11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	NTAN1	Q96AB6	310 aa		11.9	□□□□□ -0.5
MSH6-204	ENST00000445503	ZNF512	Q96ME7	567 aa	Predicted RBP	11.9	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms