RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 SOX13Q9UN79 622 aa20.8■□□□□ 0.92
CHD3-204ENST00000439235 TCAF1Q9Y4C2 921 aa20.8■□□□□ 0.92
CHD3-204ENST00000439235 CRTAMO95727 393 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 CYP2A6P11509 494 aaPredicted RBP20.79■□□□□ 0.92
CHD3-204ENST00000439235 TSHRP16473 764 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 CTPS1P17812 591 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 C5AR1P21730 350 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 NEK3P51956 506 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 CRADDP78560 199 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 ZBTB16Q05516 673 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 CCDC15Q0P6D6 951 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 MSLNQ13421 630 aaPredicted RBP20.79■□□□□ 0.92
CHD3-204ENST00000439235 UGP2Q16851 508 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 POM121L1PQ3SYA9 428 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 HP1BP3Q5SSJ5 553 aaPredicted RBP20.79■□□□□ 0.92
CHD3-204ENST00000439235 DENND2CQ68D51 928 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 SYT13Q7L8C5 426 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 NLRP9Q7RTR0 991 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 GLT6D1Q7Z4J2 308 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 AGGF1Q8N302 714 aaeCLIP20.79■□□□□ 0.92
CHD3-204ENST00000439235 BRSK1Q8TDC3 778 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 ERLEC1Q96DZ1 483 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 SCRN2Q96FV2 425 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 C9orf72Q96LT7 481 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 MCCC1Q96RQ3 725 aaPredicted RBP20.79■□□□□ 0.92
CHD3-204ENST00000439235 LYSMD1Q96S90 227 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 WDR83Q9BRX9 315 aaKnown RBP20.79■□□□□ 0.92
CHD3-204ENST00000439235 MFSD1Q9H3U5 465 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 CD248Q9HCU0 757 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 POLMQ9NP87 494 aaPredicted RBP20.79■□□□□ 0.92
CHD3-204ENST00000439235 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.79■□□□□ 0.92
CHD3-204ENST00000439235 SCML1Q9UN30 329 aa20.79■□□□□ 0.92
CHD3-204ENST00000439235 DYNC1I1O14576 645 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 DCXO43602 365 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 SPAG6O75602 509 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 TTC4O95801 387 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 DNTTP04053 509 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 PIRTP0C851 137 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 DGKEP52429 567 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 RPS14P62263 151 aaKnown RBP20.78■□□□□ 0.92
CHD3-204ENST00000439235 PDE1BQ01064 536 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 SFSWAPQ12872 951 aaKnown RBP20.78■□□□□ 0.92
CHD3-204ENST00000439235 FZD5Q13467 585 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 TAF1AQ15573 450 aaPredicted RBP20.78■□□□□ 0.92
CHD3-204ENST00000439235 CRY1Q16526 586 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 SPDYCQ5MJ68 293 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 ERAP2Q6P179 960 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 PKN3Q6P5Z2 889 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 FBXL19Q6PCT2 694 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 FBXO38Q6PIJ6 1188 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 ERN2Q76MJ5 926 aaKnown RBP20.78■□□□□ 0.92
CHD3-204ENST00000439235 PALM2Q8IXS6 379 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 MREGQ8N565 214 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 EDAQ92838 391 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 CLDN23Q96B33 292 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 IER2Q9BTL4 223 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 KIFC1Q9BW19 673 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 HDAC8Q9BY41 377 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 NINJ2Q9NZG7 142 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 ZNF711Q9Y462 761 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 SPO11Q9Y5K1 396 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 CKAP5Q14008 2032 aa20.78■□□□□ 0.92
CHD3-204ENST00000439235 FAM237BA0A1B0GVD1 139 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 TCRBV21S2A2A0A5A6 115 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 C2orf81A6NN90 581 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 MID1O15344 667 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 PRKCGP05129 697 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 POLBP06746 335 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 GSTA2P09210 222 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 ALPIP09923 528 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 TIMP2P16035 220 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 PHBP35232 272 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 HNF1BP35680 557 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 ABL2P42684 1182 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 RPS9P46781 194 aaKnown RBP20.77■□□□□ 0.92
CHD3-204ENST00000439235 ELP6Q0PNE2 266 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 TTC31Q49AM3 519 aaPredicted RBP20.77■□□□□ 0.92
CHD3-204ENST00000439235 SPANXN3Q5MJ09 141 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 BEND6Q5SZJ8 279 aaPredicted RBP20.77■□□□□ 0.92
CHD3-204ENST00000439235 TMEM92Q6UXU6 159 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 TRIM67Q6ZTA4 783 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 TTC7BQ86TV6 843 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 TMPRSS6Q8IU80 811 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 IGDCC3Q8IVU1 814 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 PEX13Q92968 403 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 RAB7BQ96AH8 199 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 CFAP36Q96G28 342 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 CHRDQ9H2X0 955 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 PABPC3Q9H361 631 aaKnown RBP20.77■□□□□ 0.92
CHD3-204ENST00000439235 RIMKLBQ9ULI2 386 aa20.77■□□□□ 0.92
CHD3-204ENST00000439235 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.77■□□□□ 0.92
CHD3-204ENST00000439235 USP1O94782 785 aa20.76■□□□□ 0.91
CHD3-204ENST00000439235 PAPSS2O95340 614 aaPredicted RBP20.76■□□□□ 0.91
CHD3-204ENST00000439235 C7P10643 843 aa20.76■□□□□ 0.91
CHD3-204ENST00000439235 ADRB3P13945 408 aa20.76■□□□□ 0.91
CHD3-204ENST00000439235 VIPR1P32241 457 aa20.76■□□□□ 0.91
CHD3-204ENST00000439235 MAGEA9P43362 315 aa20.76■□□□□ 0.91
CHD3-204ENST00000439235 METAP1P53582 386 aa20.76■□□□□ 0.91
CHD3-204ENST00000439235 TSTD2Q5T7W7 516 aa20.76■□□□□ 0.91
CHD3-204ENST00000439235 TMEM135Q86UB9 458 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms