RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 H7C4K7 107 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 STK25O00506 426 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 ZNF195O14628 629 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 SEC24AO95486 1093 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 RHOQP17081 205 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 TPH1P17752 444 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 VHLP40337 213 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 CLNS1AP54105 237 aaKnown RBP14.91□□□□□ -0.02
USP4-203ENST00000415188 TNK2Q07912 1038 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 GRM3Q14832 879 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 KPNB1Q14974 876 aaKnown RBP14.91□□□□□ -0.02
USP4-203ENST00000415188 TAF11Q15544 211 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 CCDC6Q16204 474 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 SLC5A9Q2M3M2 681 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 KHDC1Q4VXA5 237 aaKnown RBP14.91□□□□□ -0.02
USP4-203ENST00000415188 CFAP157Q5JU67 520 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 LIPMQ5VYY2 423 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 DENND5AQ6IQ26 1287 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 NPAS3Q8IXF0 933 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 IPMKQ8NFU5 416 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 CALML6Q8TD86 181 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 USP33Q8TEY7 942 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 CMTM5Q96DZ9 223 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 SLC39A13Q96H72 371 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 ZNF570Q96NI8 536 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 RANBP9Q96S59 729 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 ACE2Q9BYF1 805 aaPredicted RBP14.91□□□□□ -0.02
USP4-203ENST00000415188 SLC25A51Q9H1U9 297 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 ARNT2Q9HBZ2 717 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 VPS45Q9NRW7 570 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 OLA1Q9NTK5 396 aaKnown RBP14.91□□□□□ -0.02
USP4-203ENST00000415188 PNPOQ9NVS9 261 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 RBM22Q9NW64 420 aaKnown RBP eCLIP14.91□□□□□ -0.02
USP4-203ENST00000415188 COMMD8Q9NX08 183 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 OSER1Q9NX31 292 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 IL37Q9NZH6 218 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 STX18Q9P2W9 335 aaKnown RBP14.91□□□□□ -0.02
USP4-203ENST00000415188 ZNF212Q9UDV6 495 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 ANGPTL2Q9UKU9 493 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 SLC39A10Q9ULF5 831 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 HS3ST4Q9Y661 456 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 ZFP37Q9Y6Q3 630 aaPredicted RBP14.91□□□□□ -0.02
USP4-203ENST00000415188 MIA3Q5JRA6 1907 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 USP34Q70CQ2 3546 aa14.91□□□□□ -0.02
USP4-203ENST00000415188 MYLKQ15746 1914 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 A0A087X1B8 175 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 PRRG1O14668 218 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 SLC22A2O15244 555 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 HLA-DQB2P05538 268 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 RHOP08100 348 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 PTDSS1P48651 473 aaKnown RBP14.9□□□□□ -0.02
USP4-203ENST00000415188 NUMBP49757 651 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 RENBPP51606 427 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 SLC34A1Q06495 639 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 HNRNPDQ14103 355 aaKnown RBP14.9□□□□□ -0.02
USP4-203ENST00000415188 USP10Q14694 798 aaKnown RBP14.9□□□□□ -0.02
USP4-203ENST00000415188 RCN1Q15293 331 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 SLC39A12Q504Y0 691 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 ACSBG2Q5FVE4 666 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 EPGNQ6UW88 154 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 ARHGAP36Q6ZRI8 547 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 MAVSQ7Z434 540 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 GALNT7Q86SF2 657 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 AZIN2Q96A70 460 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 NAF1Q96HR8 494 aaKnown RBP14.9□□□□□ -0.02
USP4-203ENST00000415188 FSD1LQ9BXM9 530 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 DRC3Q9H069 523 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 ILKAPQ9H0C8 392 aaPredicted RBP14.9□□□□□ -0.02
USP4-203ENST00000415188 TBC1D17Q9HA65 648 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 CYP4F11Q9HBI6 524 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 TREX1Q9NSU2 369 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 ZNF358Q9NW07 568 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 UBP1Q9NZI7 540 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 VTI1BQ9UEU0 232 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 SFMBT1Q9UHJ3 866 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 IPO11Q9UI26 975 aaKnown RBP14.9□□□□□ -0.02
USP4-203ENST00000415188 RAP2CQ9Y3L5 183 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 PCDHB5Q9Y5E4 795 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 MYO15AQ9UKN7 3530 aa14.9□□□□□ -0.02
USP4-203ENST00000415188 OR6C75A6NL08 312 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 NRG2O14511 850 aaPredicted RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 MSI1O43347 362 aaKnown RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 PAPSS2O95340 614 aaPredicted RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 LRG1P02750 347 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 ACADSP16219 412 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 ADSLP30566 484 aaPredicted RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 SERPINB5P36952 375 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 CPA2P48052 419 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 ARCN1P48444 511 aaKnown RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 PSEN1P49768 467 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 PAPOLAP51003 745 aaKnown RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 COPAP53621 1224 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 TBX4P57082 545 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 RAB10P61026 200 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 MXRA7P84157 204 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 KDSRQ06136 332 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 PRKAA1Q13131 559 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 THOC5Q13769 683 aaKnown RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 UBAP2LQ14157 1087 aaKnown RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 ZNF280DQ6N043 979 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms