RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ELF3P78545 371 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 EGFLAMQ63HQ2 1017 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 PRR23CQ6ZRP0 262 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 HDAC7Q8WUI4 952 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 SNX33Q8WV41 574 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 LPIN3Q9BQK8 851 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 TUBB1Q9H4B7 451 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 REREQ9P2R6 1566 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 IKZF2Q9UKS7 526 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 TBX20Q9UMR3 447 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 TRIM64CA6NLI5 447 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 CA9Q16790 459 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 KLHDC7AQ5VTJ3 777 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 FAM117BQ6P1L5 589 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 SHC4Q6S5L8 630 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 MCEMP1Q8IX19 187 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 PRICKLE1Q96MT3 831 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 PRKAB1Q9Y478 270 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 IGSF6O95976 241 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 STAG3L1P0CL83 205 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 ETS2P15036 469 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 CDC25CP30307 473 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 OR1E1P30953 314 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 RPA3P35244 121 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 BMPR2Q13873 1038 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 DOK6Q6PKX4 331 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 HIST1H2AAQ96QV6 131 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 FUT8Q9BYC5 575 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 PER2O15055 1255 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 RIPK2O43353 540 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 GCATO75600 419 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 TRAPPC5Q8IUR0 188 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 THAP6Q8TBB0 222 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 TAMM41Q96BW9 452 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 MARK4Q96L34 752 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 ALDH4A1P30038 563 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 PHC2Q8IXK0 858 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 EXOC2Q96KP1 924 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 EHD4Q9H223 541 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 GALK1P51570 392 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 PLK1P53350 603 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 ANXA8L1Q5VT79 327 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 ZNF772Q68DY9 489 aaPredicted RBP13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 KLQ9UEF7 1012 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 ABLIM1O14639 778 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 NECTIN1Q15223 517 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 TMC7Q7Z402 723 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 TIGD4Q8IY51 512 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 GHDCQ8N2G8 530 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 LRMDAQ9H2I8 198 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 TRPV4Q9HBA0 871 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 SEMA4BQ9NPR2 832 aaPredicted RBP13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 AXIN2Q9Y2T1 843 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 AIPO00170 330 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 PDE2AO00408 941 aaPredicted RBP13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 TRDMT1O14717 391 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 PNLDC1Q8NA58 520 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 PPP3R2Q96LZ3 170 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 APBA2Q99767 749 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 LGR4Q9BXB1 951 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 NELFAQ9H3P2 528 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 ABCD2Q9UBJ2 740 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 PCDHA3Q9Y5H8 950 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 TPP1O14773 563 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 CCR1P32246 355 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 ASMTP46597 345 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 THOP1P52888 689 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 CREB5Q02930 508 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 SYVN1Q86TM6 617 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 OTUB2Q96DC9 234 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 ITSN1Q15811 1721 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 TP73O15350 636 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 SCN2BO60939 215 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 LINGO3P0C6S8 592 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 MTHFRP42898 656 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 S100A10P60903 97 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 TTLL6Q8N841 843 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 GPATCH1Q9BRR8 931 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 FBXO44Q9H4M3 255 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 FESP07332 822 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 RFTN2Q52LD8 501 aaPredicted RBP13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 HSDL2Q6YN16 418 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 GTF3C2Q8WUA4 911 aaPredicted RBP13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 DMRTB1Q96MA1 342 aa13.37□□□□□ -0.27
CCDC88A-204ENST00000413716 NOTOA8MTQ0 251 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 PTPN6P29350 595 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 GRAPQ13588 217 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 SLC45A4Q5BKX6 768 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 CYB5R4Q7L1T6 521 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 GRAPLQ8TC17 118 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 RAMP2O60895 175 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 PPIBP23284 216 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 MC1RQ01726 317 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 PABPC1LQ4VXU2 614 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 OR5J2Q8NH18 312 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 GJB4Q9NTQ9 266 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 PCYT1BQ9Y5K3 369 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 IFNA21P01568 189 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 SATL1Q86VE3 508 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 TBC1D10CQ8IV04 446 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms