RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 SYDE1Q6ZW31 735 aaPredicted RBP16.01■□□□□ 0.15
HMGA1-204ENST00000401473 RAB7BQ96AH8 199 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 MCCC1Q96RQ3 725 aaPredicted RBP16.01■□□□□ 0.15
HMGA1-204ENST00000401473 GPR174Q9BXC1 333 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 TRIM31Q9BZY9 425 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 ARNT2Q9HBZ2 717 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 ASIC3Q9UHC3 531 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 RPL26L1Q9UNX3 145 aaKnown RBP16.01■□□□□ 0.15
HMGA1-204ENST00000401473 PCDHGA2Q9Y5H1 932 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 TBC1D3DA0A087WVF3 549 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 TBC1D3IA0A087WXS9 549 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 TBC1D3EA0A087X179 549 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 TBC1D3KA0A087X1G2 549 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 TBC1D3FA6NER0 549 aaPredicted RBP16.01■□□□□ 0.15
HMGA1-204ENST00000401473 PRR23AA6NEV1 266 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 TBC1D3LB9A6J9 549 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 E7EVH7 732 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 SLC7A4O43246 635 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 AP1G1O43747 822 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 SUN1O94901 812 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 TBC1D3HP0C7X1 549 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 LHCGRP22888 699 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 OXTRP30559 389 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 SFSWAPQ12872 951 aaKnown RBP16.01■□□□□ 0.15
HMGA1-204ENST00000401473 TRADDQ15628 312 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 CDKN3Q16667 212 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 TBC1D3GQ6DHY5 549 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 TBC1D3CQ6IPX1 549 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 TSPAN33Q86UF1 283 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 TBC1D3Q8IZP1 549 aaPredicted RBP16.01■□□□□ 0.15
HMGA1-204ENST00000401473 DEFB119Q8N690 84 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 EID2BQ96D98 161 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 PPP1R2P1Q96PQ5 205 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 TBL1YQ9BQ87 522 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 ERP44Q9BS26 406 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 C6orf106Q9H6K1 298 aaPredicted RBP16.01■□□□□ 0.15
HMGA1-204ENST00000401473 LRRC40Q9H9A6 602 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 SGK2Q9HBY8 427 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 B4GALT6Q9UBX8 382 aa16.01■□□□□ 0.15
HMGA1-204ENST00000401473 PI4KAP42356 2102 aa16■□□□□ 0.15
HMGA1-204ENST00000401473 ERI2A8K979 691 aaKnown RBP16■□□□□ 0.15
HMGA1-204ENST00000401473 AURKAO14965 403 aa16■□□□□ 0.15
HMGA1-204ENST00000401473 SEMA4FO95754 770 aa16■□□□□ 0.15
HMGA1-204ENST00000401473 XPAP23025 273 aaPredicted RBP16■□□□□ 0.15
HMGA1-204ENST00000401473 MMP12P39900 470 aa16■□□□□ 0.15
HMGA1-204ENST00000401473 MAGEA6P43360 314 aa16■□□□□ 0.15
HMGA1-204ENST00000401473 GRIA4P48058 902 aa16■□□□□ 0.15
HMGA1-204ENST00000401473 CCDC15Q0P6D6 951 aa16■□□□□ 0.15
HMGA1-204ENST00000401473 RALGDSQ12967 914 aa16■□□□□ 0.15
HMGA1-204ENST00000401473 CRTC1Q6UUV9 634 aa16■□□□□ 0.15
HMGA1-204ENST00000401473 CBARPQ8N350 705 aaPredicted RBP16■□□□□ 0.15
HMGA1-204ENST00000401473 NAT8LQ8N9F0 302 aa16■□□□□ 0.15
HMGA1-204ENST00000401473 OR52K1Q8NGK4 314 aa16■□□□□ 0.15
HMGA1-204ENST00000401473 FAM86C1Q9NVL1 165 aa16■□□□□ 0.15
HMGA1-204ENST00000401473 ZFR2Q9UPR6 939 aaKnown RBP16■□□□□ 0.15
HMGA1-204ENST00000401473 SPO11Q9Y5K1 396 aa16■□□□□ 0.15
HMGA1-204ENST00000401473 GOLGA6CA6NDK9 693 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 GOLGA6BA6NDN3 693 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 FAM187AA6NFU0 413 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 EFCAB8A8MWE9 144 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 PSMD3O43242 534 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 RPP40O75818 363 aaKnown RBP15.99■□□□□ 0.15
HMGA1-204ENST00000401473 TMEM63AO94886 807 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 PCDH8O95206 1070 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 GOLGA6DP0CG33 693 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 TPH1P17752 444 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 HLA-DPA1P20036 260 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 RPL21P46778 160 aaKnown RBP15.99■□□□□ 0.15
HMGA1-204ENST00000401473 PTSQ03393 145 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 RNASEH2BQ5TBB1 312 aaKnown RBP15.99■□□□□ 0.15
HMGA1-204ENST00000401473 DUPD1Q68J44 220 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 ZNF534Q76KX8 674 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 CCHCR1Q8TD31 782 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 GAB3Q8WWW8 586 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 LYSMD1Q96S90 227 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 WRAP53Q9BUR4 548 aaKnown RBP15.99■□□□□ 0.15
HMGA1-204ENST00000401473 KCNH6Q9H252 994 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 KDM4CQ9H3R0 1056 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 EBF2Q9HAK2 575 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 EIF2B3Q9NR50 452 aaKnown RBP15.99■□□□□ 0.15
HMGA1-204ENST00000401473 GOLGA6AQ9NYA3 693 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 DMGDHQ9UI17 866 aaKnown RBP15.99■□□□□ 0.15
HMGA1-204ENST00000401473 TPX2Q9ULW0 747 aaKnown RBP15.99■□□□□ 0.15
HMGA1-204ENST00000401473 SHOC2Q9UQ13 582 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 SNX24Q9Y343 169 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 EP300Q09472 2414 aaPredicted RBP15.99■□□□□ 0.15
HMGA1-204ENST00000401473 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 NEMP1O14524 444 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 DNALI1O14645 258 aaPredicted RBP15.99■□□□□ 0.15
HMGA1-204ENST00000401473 MMP20O60882 483 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 CLDN7O95471 211 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 LMAN1P49257 510 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 LIG3P49916 1009 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 SUOXP51687 545 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 PPP2CBP62714 309 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 PPP2CAP67775 309 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 ELP6Q0PNE2 266 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 MTM1Q13496 603 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 SEL1L3Q68CR1 1132 aa15.99■□□□□ 0.15
HMGA1-204ENST00000401473 NAPEPLDQ6IQ20 393 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms