RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 CADM3Q8N126 398 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 LEMD2Q8NC56 503 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 RMDN1Q96DB5 314 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 PPM1MQ96MI6 270 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 FUNDC2Q9BWH2 189 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 ANKRD60Q9BZ19 345 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 CHRAC1Q9NRG0 131 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 RNF146Q9NTX7 359 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 COQ4Q9Y3A0 265 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 DDTLA6NHG4 134 aaPredicted RBP9.35□□□□□ -0.91
COL28A1-201ENST00000399429 ASB14A6NK59 587 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 EFCAB9A8MZ26 197 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 SLC22A1O15245 554 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 GAS2O43903 313 aaKnown RBP9.35□□□□□ -0.91
COL28A1-201ENST00000399429 AIREO43918 545 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 ABCB7O75027 752 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 TMCC2O75069 709 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 VDRP11473 427 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 CD247P20963 164 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 GRK3P35626 688 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 NR2C2P49116 596 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 SPDYE2Q495Y8 402 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 SYCE2Q6PIF2 218 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 RNF111Q6ZNA4 994 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 SLC7A14Q8TBB6 771 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 RASSF5Q8WWW0 418 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 CPB2Q96IY4 423 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 ZNF597Q96LX8 424 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 PRDM12Q9H4Q4 367 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 AGO4Q9HCK5 861 aaKnown RBP9.35□□□□□ -0.91
COL28A1-201ENST00000399429 MORF4L1Q9UBU8 362 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 NARFQ9UHQ1 456 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 OGTO15294 1046 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 TP73O15350 636 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 DYRK3O43781 588 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 ERBB2P04626 1255 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 GPIP06744 558 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 NR3C2P08235 984 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 CYP2C8P10632 490 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 CHRNB1P11230 501 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 ADORA2AP29274 412 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 PGGT1BP53609 377 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 FAM98CQ17RN3 349 aaKnown RBP9.34□□□□□ -0.91
COL28A1-201ENST00000399429 TRIQKQ629K1 86 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 AHSA2Q719I0 299 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 SLC22A9Q8IVM8 553 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 PACRGLQ8N7B6 248 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 ZFP90Q8TF47 636 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 TFAP2BQ92481 460 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 ACDQ96AP0 544 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 LENG9Q96B70 501 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 SH3YL1Q96HL8 342 aaPredicted RBP9.34□□□□□ -0.91
COL28A1-201ENST00000399429 TBCBQ99426 244 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 EGFL8Q99944 293 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 CHCHD6Q9BRQ6 235 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 CLEC4MQ9H2X3 399 aaPredicted RBP9.34□□□□□ -0.91
COL28A1-201ENST00000399429 C4AP0C0L4 1744 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 C4BP0C0L5 1744 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 OR6C70A6NIJ9 312 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 MOCS2O96007 188 aaPredicted RBP9.34□□□□□ -0.91
COL28A1-201ENST00000399429 IL1BP01584 269 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 GOT1P17174 413 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 ITGB5P18084 799 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 FMO3P31513 532 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 EFNA5P52803 228 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 LIMK2P53671 638 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 RAB10P61026 200 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 APOFQ13790 326 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 UGCGQ16739 394 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 PFKFB4Q16877 469 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 CCBE1Q6UXH8 406 aaPredicted RBP9.34□□□□□ -0.91
COL28A1-201ENST00000399429 ARMCX2Q7L311 632 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 WDR49Q8IV35 697 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 ZFPM1Q8IX07 1006 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 PSD4Q8NDX1 1056 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 KBTBD8Q8NFY9 601 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 LHPPQ9H008 270 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 TMEM245Q9H330 911 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 SEMA4BQ9NPR2 832 aaPredicted RBP9.34□□□□□ -0.91
COL28A1-201ENST00000399429 DYRK4Q9NR20 520 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 CD274Q9NZQ7 290 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 CNTN3Q9P232 1028 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 PCDH10Q9P2E7 1040 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 KLHL3Q9UH77 587 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 OGDHLQ9ULD0 1010 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 PRORSD1PA6NEY8 169 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 CD36P16671 472 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 ERCC2P18074 760 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 CES1P23141 567 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 ALDH1B1P30837 517 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 FMO4P31512 558 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 ABATP80404 500 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 CDH17Q12864 832 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 FAM182BQ5T319 152 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 ZYG11AQ6WRX3 759 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 CAND1Q86VP6 1230 aaKnown RBP9.34□□□□□ -0.91
COL28A1-201ENST00000399429 ATL1Q8WXF7 558 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 CLIP3Q96DZ5 547 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 FAM120BQ96EK7 910 aaKnown RBP9.34□□□□□ -0.91
COL28A1-201ENST00000399429 CELF6Q96J87 481 aaKnown RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms