RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 CCDC3Q9BQI4 270 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 ISCUQ9H1K1 167 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 POLR1BQ9H9Y6 1135 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 MRPL40Q9NQ50 206 aaKnown RBP16.67■□□□□ 0.26
PTPRK-208ENST00000392449 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.67■□□□□ 0.26
PTPRK-208ENST00000392449 DONSONQ9NYP3 566 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 PADI4Q9UM07 663 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 DOLKQ9UPQ8 538 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 ENTPD2Q9Y5L3 495 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 SCINQ9Y6U3 715 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 SYCE3A1L190 88 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 TMEM202A6NGA9 273 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 TRAFD1O14545 582 aaPredicted RBP16.67■□□□□ 0.26
PTPRK-208ENST00000392449 PEX11BO96011 259 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 CTSEP14091 401 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 PEX5P50542 639 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 SRP54P61011 504 aaKnown RBP16.67■□□□□ 0.26
PTPRK-208ENST00000392449 LBRQ14739 615 aaKnown RBP16.67■□□□□ 0.26
PTPRK-208ENST00000392449 PTPRRQ15256 657 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 TDRD12Q587J7 1177 aaKnown RBP16.67■□□□□ 0.26
PTPRK-208ENST00000392449 FOXR1Q6PIV2 292 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 LIPIQ6XZB0 460 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 OR1E3Q8WZA6 343 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 HIC2Q96JB3 615 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 TBATAQ96M53 351 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 LGMNQ99538 433 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.67■□□□□ 0.26
PTPRK-208ENST00000392449 EDEM3Q9BZQ6 932 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 THAP2Q9H0W7 228 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 CBX8Q9HC52 389 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 ASCL3Q9NQ33 180 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 NCKIPSDQ9NZQ3 722 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 KLQ9UEF7 1012 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 PCDHGC4Q9Y5F7 938 aa16.67■□□□□ 0.26
PTPRK-208ENST00000392449 H3BRJ5 948 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 TOR1BO14657 336 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 RASGRP1O95267 797 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 ELFN1P0C7U0 828 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 RARAP10276 462 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 HTR1BP28222 390 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 LSSP48449 732 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 HCAR3P49019 387 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 MAXP61244 160 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 ACAP1Q15027 740 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 AGERQ15109 404 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 DPYSL2Q16555 572 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 TMCO4Q5TGY1 634 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 RBM44Q6ZP01 1051 aaKnown RBP16.66■□□□□ 0.26
PTPRK-208ENST00000392449 POLNQ7Z5Q5 900 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 CPNE8Q86YQ8 564 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 PSTKQ8IV42 348 aaKnown RBP16.66■□□□□ 0.26
PTPRK-208ENST00000392449 CPLX3Q8WVH0 158 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 CCDC74AQ96AQ1 378 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 WDR92Q96MX6 357 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 CSPG4P5Q96PW8 444 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 PSKH2Q96QS6 385 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 LGR4Q9BXB1 951 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 FGF22Q9HCT0 170 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 SEPT3Q9UH03 358 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 ATMQ13315 3056 aa16.66■□□□□ 0.26
PTPRK-208ENST00000392449 MYBL1P10243 752 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 PCK1P35558 622 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 PBX1P40424 430 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 RPIAP49247 311 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 PCBP4P57723 403 aaKnown RBP16.65■□□□□ 0.26
PTPRK-208ENST00000392449 CXADRP78310 365 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 FANCCQ00597 558 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 NSUN2Q08J23 767 aaKnown RBP eCLIP16.65■□□□□ 0.26
PTPRK-208ENST00000392449 MTM1Q13496 603 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 RFTN1Q14699 578 aaPredicted RBP16.65■□□□□ 0.26
PTPRK-208ENST00000392449 ELOCQ15369 112 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 ESRP1Q6NXG1 681 aaKnown RBP16.65■□□□□ 0.26
PTPRK-208ENST00000392449 TMCO3Q6UWJ1 677 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 DPPA4Q7L190 304 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 B3GNT8Q7Z7M8 397 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 FSTL5Q8N475 847 aaPredicted RBP16.65■□□□□ 0.26
PTPRK-208ENST00000392449 ARL10Q8N8L6 244 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 PDCD6IPQ8WUM4 868 aaKnown RBP16.65■□□□□ 0.26
PTPRK-208ENST00000392449 GLMNQ92990 594 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 TRIM11Q96F44 468 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 PRR11Q96HE9 360 aaPredicted RBP16.65■□□□□ 0.26
PTPRK-208ENST00000392449 ZNF578Q96N58 590 aaPredicted RBP16.65■□□□□ 0.26
PTPRK-208ENST00000392449 MRPL47Q9HD33 250 aaKnown RBP16.65■□□□□ 0.26
PTPRK-208ENST00000392449 B4GALT6Q9UBX8 382 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 GPR34Q9UPC5 381 aa16.65■□□□□ 0.26
PTPRK-208ENST00000392449 KALRNO60229 2985 aa16.64■□□□□ 0.25
PTPRK-208ENST00000392449 A0A0U1RQS6 177 aa16.64■□□□□ 0.25
PTPRK-208ENST00000392449 TMEM110-MUSTN1A8MSY1 372 aa16.64■□□□□ 0.25
PTPRK-208ENST00000392449 MAFKO60675 156 aa16.64■□□□□ 0.25
PTPRK-208ENST00000392449 DXOO77932 396 aaKnown RBP16.64■□□□□ 0.25
PTPRK-208ENST00000392449 ARL4AP40617 200 aa16.64■□□□□ 0.25
PTPRK-208ENST00000392449 BLKP51451 505 aa16.64■□□□□ 0.25
PTPRK-208ENST00000392449 AP1S1P61966 158 aa16.64■□□□□ 0.25
PTPRK-208ENST00000392449 SLC25A11Q02978 314 aaKnown RBP16.64■□□□□ 0.25
PTPRK-208ENST00000392449 MMRN1Q13201 1228 aa16.64■□□□□ 0.25
PTPRK-208ENST00000392449 ZNF235Q14590 738 aa16.64■□□□□ 0.25
PTPRK-208ENST00000392449 ACOX1Q15067 660 aa16.64■□□□□ 0.25
PTPRK-208ENST00000392449 FIGNQ5HY92 759 aa16.64■□□□□ 0.25
PTPRK-208ENST00000392449 DENND2CQ68D51 928 aa16.64■□□□□ 0.25
PTPRK-208ENST00000392449 ZNF248Q8NDW4 579 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms