RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 CCDC113Q9H0I3 377 aa-0.64□□□□□ -2.51
RNU6-540P-201ENST00000384622 TMX4Q9H1E5 349 aaPredicted RBP-0.64□□□□□ -2.51
RNU6-540P-201ENST00000384622 NOX4Q9NPH5 578 aa-0.64□□□□□ -2.51
RNU6-540P-201ENST00000384622 ABCD2Q9UBJ2 740 aa-0.64□□□□□ -2.51
RNU6-540P-201ENST00000384622 MARCOQ9UEW3 520 aaPredicted RBP-0.64□□□□□ -2.51
RNU6-540P-201ENST00000384622 FEZ2Q9UHY8 353 aaPredicted RBP-0.64□□□□□ -2.51
RNU6-540P-201ENST00000384622 ZNF223Q9UK11 482 aaPredicted RBP-0.64□□□□□ -2.51
RNU6-540P-201ENST00000384622 SLC27A6Q9Y2P4 619 aa-0.64□□□□□ -2.51
RNU6-540P-201ENST00000384622 UBIAD1Q9Y5Z9 338 aa-0.64□□□□□ -2.51
RNU6-540P-201ENST00000384622 MYO9AB2RTY4 2548 aa-0.64□□□□□ -2.51
RNU6-540P-201ENST00000384622 PRRC2BQ5JSZ5 2229 aaKnown RBP-0.64□□□□□ -2.51
RNU6-540P-201ENST00000384622 CNTRLQ7Z7A1 2325 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 COL1A1P02452 1464 aaPredicted RBP-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 COL15A1P39059 1388 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 IGKV2D-24A0A075B6R9 120 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 ARPC4-TTLL3A0A0A6YYG9 625 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 LOC100653049A0A140TA62 436 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 MED19A0JLT2 244 aaPredicted RBP-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 LRRC14BA6NHZ5 514 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 DUXAA6NLW8 204 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 KLF11O14901 512 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 IDH3BO43837 385 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 RFPL2O75678 378 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 CBR3O75828 277 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 KRT34O76011 436 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 THY1P04216 161 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 HOXD4P09016 255 aaPredicted RBP-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 AXLP30530 894 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 USP8P40818 1118 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 DGKQP52824 942 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 RAG2P55895 527 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 SESN3P58005 492 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 TAS2R38P59533 333 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 IGLV3-21P80748 117 aaPredicted RBP-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 CLCA4Q14CN2 919 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 C3orf36Q3SXR2 165 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 PLK5Q496M5 336 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 ATP13A5Q4VNC0 1218 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 CCNI2Q6ZMN8 369 aaPredicted RBP-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 SND1Q7KZF4 910 aaKnown RBP eCLIP-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 ARHGAP22Q7Z5H3 698 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 MMAAQ8IVH4 418 aaKnown RBP-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 CLRN3Q8NCR9 226 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 C3orf20Q8ND61 904 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 OR2W6PQ8NHA6 318 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 GPT2Q8TD30 523 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 U2AF1L4Q8WU68 220 aaKnown RBP-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 SLC20A1Q8WUM9 679 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 ZFAND2BQ8WV99 257 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 TRIB2Q92519 343 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 TMEM18Q96B42 140 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 PDLIM5Q96HC4 596 aaKnown RBP-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 PRAC1Q96KF2 57 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 HES7Q9BYE0 225 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 CXXC4Q9H2H0 198 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 ACTR5Q9H9F9 607 aaPredicted RBP-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 ZNF71Q9NQZ8 489 aaPredicted RBP-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 SLC9A2Q9UBY0 812 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 ABCF2Q9UG63 623 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 POLHQ9Y253 713 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 PCDHA1Q9Y5I3 950 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 LRP1BQ9NZR2 4599 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 PDS5AQ29RF7 1337 aaKnown RBP-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 PKD1L1Q8TDX9 2849 aa-0.65□□□□□ -2.51
RNU6-540P-201ENST00000384622 LMTK3Q96Q04 1460 aa-0.66□□□□□ -2.51
RNU6-540P-201ENST00000384622 GVINP1Q7Z2Y8 2422 aa-0.66□□□□□ -2.51
RNU6-540P-201ENST00000384622 NLRC5Q86WI3 1866 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 CLDN7O95471 211 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 IGHV4-39P01824 125 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 MMP2P08253 660 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 MMP3P08254 477 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZSCAN5DPP0CG00 497 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 DHRS4L1P0CG22 281 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZCCHC18P0CG32 403 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 ITGA2P17301 1181 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 NTSR1P30989 418 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 GNL1P36915 607 aaPredicted RBP-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 TMPOP42166 694 aaKnown RBP-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 ITGA8P53708 1063 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 TMPRSS15P98073 1019 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 ITGADQ13349 1161 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 PDCD2Q16342 344 aaPredicted RBP-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZNF658BQ4V348 819 aaPredicted RBP-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 KRTAP13-2Q52LG2 175 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 EMC10Q5UCC4 262 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 KCTD20Q7Z5Y7 419 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZBTB34Q8NCN2 500 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 OR52L2PQ8NGH6 319 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 PMM1Q92871 262 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 ARHGEF26Q96DR7 871 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 SIPA1Q96FS4 1042 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 MAGED4Q96JG8 741 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 ADAD1Q96M93 576 aaKnown RBP-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 HIST1H2AAQ96QV6 131 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 GTPBP2Q9BX10 602 aaKnown RBP-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 MS4A7Q9GZW8 240 aaPredicted RBP-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 EDA2RQ9HAV5 297 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZDHHC7Q9NXF8 308 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 MAGEC2Q9UBF1 373 aaPredicted RBP-0.66□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms