RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 TSTD2Q5T7W7 516 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 CYS1Q717R9 158 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.98■□□□□ 0.79
CLN3-205ENST00000359984 KCNV2Q8TDN2 545 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 RUFY1Q96T51 708 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 CCDC77Q9BR77 488 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 ACBD3Q9H3P7 528 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 MAGEE1Q9HCI5 957 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 TREX1Q9NSU2 369 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 SARDHQ9UL12 918 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 A0A1W2PQ67 120 aa19.97■□□□□ 0.79
CLN3-205ENST00000359984 H3BQF6 201 aa19.97■□□□□ 0.79
CLN3-205ENST00000359984 PRNPP04156 253 aa19.97■□□□□ 0.79
CLN3-205ENST00000359984 CD72P21854 359 aa19.97■□□□□ 0.79
CLN3-205ENST00000359984 GABPB1Q06547 395 aaPredicted RBP19.97■□□□□ 0.79
CLN3-205ENST00000359984 FRG1Q14331 258 aaKnown RBP19.97■□□□□ 0.79
CLN3-205ENST00000359984 EFTUD2Q15029 972 aaKnown RBP eCLIP19.97■□□□□ 0.793e-6■■■■□ 22
CLN3-205ENST00000359984 MLF2Q15773 248 aaPredicted RBP19.97■□□□□ 0.79
CLN3-205ENST00000359984 CNGA3Q16281 694 aa19.97■□□□□ 0.79
CLN3-205ENST00000359984 ZNF805Q5CZA5 627 aa19.97■□□□□ 0.79
CLN3-205ENST00000359984 CEP85LQ5SZL2 805 aa19.97■□□□□ 0.79
CLN3-205ENST00000359984 TMIEQ8NEW7 156 aa19.97■□□□□ 0.79
CLN3-205ENST00000359984 ERLEC1Q96DZ1 483 aa19.97■□□□□ 0.79
CLN3-205ENST00000359984 TMEM109Q9BVC6 243 aa19.97■□□□□ 0.79
CLN3-205ENST00000359984 IL1RAPL1Q9NZN1 696 aa19.97■□□□□ 0.79
CLN3-205ENST00000359984 PPM1HQ9ULR3 514 aa19.97■□□□□ 0.79
CLN3-205ENST00000359984 PPIL1Q9Y3C6 166 aa19.97■□□□□ 0.79
CLN3-205ENST00000359984 TCF20Q9UGU0 1960 aaKnown RBP19.97■□□□□ 0.79
CLN3-205ENST00000359984 A0A0U1RQS6 177 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 TSPAN11A1L157 253 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 C19orf67A6NJJ6 358 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 BUD23O43709 281 aaKnown RBP19.96■□□□□ 0.79
CLN3-205ENST00000359984 PAPSS2O95340 614 aaPredicted RBP19.96■□□□□ 0.79
CLN3-205ENST00000359984 HNF1BP35680 557 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 LAMB3Q13751 1172 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 TAF1AQ15573 450 aaPredicted RBP19.96■□□□□ 0.79
CLN3-205ENST00000359984 LONRF1Q17RB8 773 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 POM121L1PQ3SYA9 428 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 KBTBD12Q3ZCT8 623 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 BRAT1Q6PJG6 821 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 NLRP9Q7RTR0 991 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 GLT6D1Q7Z4J2 308 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 IL17RCQ8NAC3 791 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 EPS8L3Q8TE67 593 aaKnown RBP19.96■□□□□ 0.79
CLN3-205ENST00000359984 CYTH2Q99418 400 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 SMYD2Q9NRG4 433 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 HACD3Q9P035 362 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 SORCS3Q9UPU3 1222 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 COL6A3P12111 3177 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 EXOC1LA0A1B0GW35 172 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 TCEA3O75764 348 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 CRTAMO95727 393 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 OAS2P29728 719 aaKnown RBP19.96■□□□□ 0.79
CLN3-205ENST00000359984 NTSR1P30989 418 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 PTPRCAPQ14761 206 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 SMAD1Q15797 465 aaKnown RBP19.96■□□□□ 0.79
CLN3-205ENST00000359984 TTC30BQ8N4P2 665 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 OR13J1Q8NGT2 312 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 PIP4K2CQ8TBX8 421 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 SCRN2Q96FV2 425 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 CERS2Q96G23 380 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 DKK3Q9UBP4 350 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 ZNF711Q9Y462 761 aa19.96■□□□□ 0.79
CLN3-205ENST00000359984 CAPN8A6NHC0 703 aa19.95■□□□□ 0.78
CLN3-205ENST00000359984 FAM159BA6NKW6 160 aa19.95■□□□□ 0.78
CLN3-205ENST00000359984 CXorf49A8MYA2 514 aaPredicted RBP19.95■□□□□ 0.78
CLN3-205ENST00000359984 KPNA3O00505 521 aaPredicted RBP19.95■□□□□ 0.78
CLN3-205ENST00000359984 ERVK-10P10266 1014 aa19.95■□□□□ 0.78
CLN3-205ENST00000359984 TIMP2P16035 220 aa19.95■□□□□ 0.78
CLN3-205ENST00000359984 GCAP28676 217 aa19.95■□□□□ 0.78
CLN3-205ENST00000359984 SLCO1A2P46721 670 aa19.95■□□□□ 0.78
CLN3-205ENST00000359984 METAP1P53582 386 aa19.95■□□□□ 0.78
CLN3-205ENST00000359984 POLR2LP62875 67 aaKnown RBP19.95■□□□□ 0.78
CLN3-205ENST00000359984 CAMK2GQ13555 558 aaPredicted RBP19.95■□□□□ 0.78
CLN3-205ENST00000359984 CCINQ13939 588 aa19.95■□□□□ 0.78
CLN3-205ENST00000359984 KLHL38Q2WGJ6 581 aa19.95■□□□□ 0.78
CLN3-205ENST00000359984 HCAR2Q8TDS4 363 aa19.95■□□□□ 0.78
CLN3-205ENST00000359984 GABRG3Q99928 467 aa19.95■□□□□ 0.78
CLN3-205ENST00000359984 ROPN1BQ9BZX4 212 aaPredicted RBP19.95■□□□□ 0.78
CLN3-205ENST00000359984 TRABDQ9H4I3 376 aa19.95■□□□□ 0.78
CLN3-205ENST00000359984 ROPN1Q9HAT0 212 aaPredicted RBP19.95■□□□□ 0.78
CLN3-205ENST00000359984 PPANQ9NQ55 473 aaKnown RBP19.95■□□□□ 0.78
CLN3-205ENST00000359984 RIMKLBQ9ULI2 386 aa19.95■□□□□ 0.78
CLN3-205ENST00000359984 CA14Q9ULX7 337 aa19.95■□□□□ 0.78
CLN3-205ENST00000359984 TLDC2A0PJX2 215 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 SMIM23A6NLE4 172 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 POC1B-GALNT4F8VUJ3 575 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 MAN2B1O00754 1011 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 RASGRF2O14827 1237 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 KLF8O95600 359 aaPredicted RBP19.94■□□□□ 0.78
CLN3-205ENST00000359984 ARNTP27540 789 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 ZNF140P52738 457 aaPredicted RBP19.94■□□□□ 0.78
CLN3-205ENST00000359984 MRPS21P82921 87 aaKnown RBP19.94■□□□□ 0.78
CLN3-205ENST00000359984 MGAT5Q09328 741 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 CDKN3Q16667 212 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 UGP2Q16851 508 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 MMAAQ8IVH4 418 aaKnown RBP19.94■□□□□ 0.78
CLN3-205ENST00000359984 NDUFAF2Q8N183 169 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 STYXQ8WUJ0 223 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 DNAJC1Q96KC8 554 aaKnown RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms