RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 DSG1Q02413 1049 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 ACVR1Q04771 509 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 GPNMBQ14956 572 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 RTP2Q5QGT7 225 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 FUT10Q6P4F1 479 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 RCN3Q96D15 328 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 IFT43Q96FT9 208 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 FEM1CQ96JP0 617 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 PDFQ9HBH1 243 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 TNFRSF12AQ9NP84 129 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 STARD7Q9NQZ5 370 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 NBNO60934 754 aa20.91■□□□□ 0.94
CCDC88B-203ENST00000359902 CAPRIN2Q6IMN6 1127 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-203ENST00000359902 RPS27LQ71UM5 84 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-203ENST00000359902 KBTBD6Q86V97 674 aa20.91■□□□□ 0.94
CCDC88B-203ENST00000359902 CFAP52Q8N1V2 620 aa20.91■□□□□ 0.94
CCDC88B-203ENST00000359902 DBF4BQ8NFT6 615 aa20.91■□□□□ 0.94
CCDC88B-203ENST00000359902 CEP70Q8NHQ1 597 aa20.91■□□□□ 0.94
CCDC88B-203ENST00000359902 STK39Q9UEW8 545 aa20.91■□□□□ 0.94
CCDC88B-203ENST00000359902 ADAMTS6Q9UKP5 1117 aa20.91■□□□□ 0.94
CCDC88B-203ENST00000359902 PACSIN3Q9UKS6 424 aa20.91■□□□□ 0.94
CCDC88B-203ENST00000359902 ARL5AQ9Y689 179 aa20.91■□□□□ 0.94
CCDC88B-203ENST00000359902 DPPA5A6NC42 116 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 SP100P23497 879 aaPredicted RBP20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 KCNC1P48547 511 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 PLK1P53350 603 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 PTPRCAPQ14761 206 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 TMEM154Q6P9G4 183 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 LGI2Q8N0V4 545 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 PHF21BQ96EK2 531 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 CRYL1Q9Y2S2 319 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 MTF2Q9Y483 593 aaPredicted RBP20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 NT5C1B-RDH14C9J2C7 533 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 EPOP01588 193 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 SELPP16109 830 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 HLA-DPA1P20036 260 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 SLC26A3P40879 764 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 KPNA1P52294 538 aaPredicted RBP20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 SATB1Q01826 763 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 CDC16Q13042 620 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 BTG3Q14201 252 aaPredicted RBP20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 ZNF235Q14590 738 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 GPR158Q5T848 1215 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 LHX8Q68G74 356 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 TAS1R1Q7RTX1 841 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 PIM3Q86V86 326 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 BLOC1S5Q8TDH9 187 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 CDRT15Q96T59 188 aa20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 EML4Q9HC35 981 aaKnown RBP20.9■□□□□ 0.94
CCDC88B-203ENST00000359902 A0A0D9SEW6 157 aa20.89■□□□□ 0.94
CCDC88B-203ENST00000359902 FGF1P05230 155 aa20.89■□□□□ 0.94
CCDC88B-203ENST00000359902 SMARCB1Q12824 385 aa20.89■□□□□ 0.94
CCDC88B-203ENST00000359902 C5orf22Q49AR2 442 aa20.89■□□□□ 0.94
CCDC88B-203ENST00000359902 ISCA2Q86U28 154 aa20.89■□□□□ 0.94
CCDC88B-203ENST00000359902 PELI3Q8N2H9 469 aa20.89■□□□□ 0.94
CCDC88B-203ENST00000359902 FAR2Q96K12 515 aa20.89■□□□□ 0.94
CCDC88B-203ENST00000359902 DNAJC1Q96KC8 554 aaKnown RBP20.89■□□□□ 0.94
CCDC88B-203ENST00000359902 SERPINI1Q99574 410 aa20.89■□□□□ 0.94
CCDC88B-203ENST00000359902 ALG9Q9H6U8 611 aa20.89■□□□□ 0.94
CCDC88B-203ENST00000359902 VPS28Q9UK41 221 aa20.89■□□□□ 0.94
CCDC88B-203ENST00000359902 FIS1Q9Y3D6 152 aa20.89■□□□□ 0.94
CCDC88B-203ENST00000359902 SLC38A8A6NNN8 435 aa20.89■□□□□ 0.93
CCDC88B-203ENST00000359902 F5H5T6 163 aa20.89■□□□□ 0.93
CCDC88B-203ENST00000359902 H3BNX3 289 aa20.89■□□□□ 0.93
CCDC88B-203ENST00000359902 GOT2P00505 430 aaKnown RBP20.89■□□□□ 0.93
CCDC88B-203ENST00000359902 SLC6A4P31645 630 aa20.89■□□□□ 0.93
CCDC88B-203ENST00000359902 GALNT3Q14435 633 aa20.89■□□□□ 0.93
CCDC88B-203ENST00000359902 FAM45BPQ6NSW5 357 aa20.89■□□□□ 0.93
CCDC88B-203ENST00000359902 ZNF549Q6P9A3 640 aa20.89■□□□□ 0.93
CCDC88B-203ENST00000359902 CUZD1Q86UP6 607 aa20.89■□□□□ 0.93
CCDC88B-203ENST00000359902 SLC22A9Q8IVM8 553 aa20.89■□□□□ 0.93
CCDC88B-203ENST00000359902 FAM45AQ8TCE6 357 aa20.89■□□□□ 0.93
CCDC88B-203ENST00000359902 GATA6Q92908 595 aa20.89■□□□□ 0.93
CCDC88B-203ENST00000359902 PEX13Q92968 403 aa20.89■□□□□ 0.93
CCDC88B-203ENST00000359902 CCDC162PA2VCL2 907 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 TCAF2A6NFQ2 919 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 ARVCFO00192 962 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 CLGNO14967 610 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 CD3EAPO15446 510 aaKnown RBP20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 SKAP2O75563 359 aaPredicted RBP20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 GLP2RO95838 553 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 ATF6P18850 670 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 IMPDH1P20839 514 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 TIAL1Q01085 375 aaKnown RBP eCLIP20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 GALNT1Q10472 559 aaPredicted RBP20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 PIGGQ5H8A4 983 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 BNC2Q6ZN30 1099 aaPredicted RBP20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 CHSY3Q70JA7 882 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 TMEM173Q86WV6 379 aaPredicted RBP20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 PGAM4Q8N0Y7 254 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 GPR150Q8NGU9 434 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 BRSK1Q8TDC3 778 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 SPDL1Q96EA4 605 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 ZNF599Q96NL3 588 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 GSTO2Q9H4Y5 243 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 EFCAB1Q9HAE3 211 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 MEAF6Q9HAF1 191 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 ACTL7AQ9Y615 435 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 UPP2O95045 317 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms