RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 RHOT2Q8IXI1 618 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 RBFAQ8N0V3 343 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 BBS5Q8N3I7 341 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 PLA2G15Q8NCC3 412 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 ZCCHC14Q8WYQ9 949 aaKnown RBP18.47■□□□□ 0.55
CLN3-202ENST00000355477 RFFLQ8WZ73 363 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 SPOCK2Q92563 424 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 MAML1Q92585 1016 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 TSGA13Q96PP4 275 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 RNF157Q96PX1 679 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 NLGN3Q9NZ94 848 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 B4GALT6Q9UBX8 382 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 INTUQ9ULD6 942 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 HYOU1Q9Y4L1 999 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 LY6G6EA0A0G2JKS1 128 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 NEMP2A6NFY4 417 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 C3orf70A6NLC5 250 aaPredicted RBP18.46■□□□□ 0.55
CLN3-202ENST00000355477 H3BM21 787 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 TOR1BO14657 336 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 MATN3O15232 486 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 AQP9O43315 295 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 SOCS5O75159 536 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 GCATO75600 419 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 RECQL5O94762 991 aaPredicted RBP18.46■□□□□ 0.55
CLN3-202ENST00000355477 CAMK2BQ13554 666 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 TCEAL1Q15170 157 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 PTPRRQ15256 657 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 IFI16Q16666 785 aaKnown RBP18.46■□□□□ 0.55
CLN3-202ENST00000355477 MACC1Q6ZN28 852 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 LMX1AQ8TE12 382 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 APOLD1Q96LR9 279 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 SEMA3CQ99985 751 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 APOOQ9BUR5 198 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 OR1A2Q9Y585 309 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 U3KQA8 63 aa18.46■□□□□ 0.55
CLN3-202ENST00000355477 ITPR1Q14643 2758 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 LRRD1A4D1F6 860 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 TAF4O00268 1085 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 PCCBP05166 539 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 ELFN1P0C7U0 828 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 CCNCP24863 283 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 PEX5P50542 639 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 DAB2P98082 770 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 ILKQ13418 452 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 C1orf61Q13536 156 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 HS1BP3Q53T59 392 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 RALGPS1Q5JS13 557 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 TMPRSS12Q86WS5 348 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 PHACTR4Q8IZ21 702 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 PELI3Q8N2H9 469 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.45■□□□□ 0.54
CLN3-202ENST00000355477 PLD5Q8N7P1 536 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 BTN2A2Q8WVV5 523 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 TSACCQ96A04 125 aaPredicted RBP18.45■□□□□ 0.54
CLN3-202ENST00000355477 DTLQ9NZJ0 730 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 APOBEC3BQ9UH17 382 aaKnown RBP18.45■□□□□ 0.54
CLN3-202ENST00000355477 CSNK1G3Q9Y6M4 447 aa18.45■□□□□ 0.54
CLN3-202ENST00000355477 ARHGEF17Q96PE2 2063 aaPredicted RBP18.45■□□□□ 0.54
CLN3-202ENST00000355477 TRABD2BA6NFA1 517 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 PGLSO95336 258 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 LCA5LO95447 670 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 CPP00450 1065 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 PDHA1P08559 390 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 ALPPL2P10696 532 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 CDK4P11802 303 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 CKMT1AP12532 417 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 CCNB1P14635 433 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 MAGEA1P43355 309 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 ZNF75DP51815 510 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 ITKQ08881 620 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 CNGA3Q16281 694 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 DEFB133Q30KQ1 61 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 PRRT3Q5FWE3 981 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 FAM182AQ5T1J6 154 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 FAXCQ5TGI0 409 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 HES3Q5TGS1 186 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 KCTD16Q68DU8 428 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 TIGD7Q6NT04 549 aaPredicted RBP18.44■□□□□ 0.54
CLN3-202ENST00000355477 GAS2L3Q86XJ1 694 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 CBARPQ8N350 705 aaPredicted RBP18.44■□□□□ 0.54
CLN3-202ENST00000355477 FAM181AQ8N9Y4 354 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 PIH1D2Q8WWB5 315 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 FATE1Q969F0 183 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 COQ10AQ96MF6 247 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 SMIM14Q96QK8 99 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 LRRC61Q9BV99 259 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 DUSP23Q9BVJ7 150 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 CLPBQ9H078 707 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 RBM22Q9NW64 420 aaKnown RBP eCLIP18.44■□□□□ 0.54
CLN3-202ENST00000355477 SPASTQ9UBP0 616 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 PHTF1Q9UMS5 762 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 TFR2Q9UP52 801 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 RAI2Q9Y5P3 530 aa18.44■□□□□ 0.54
CLN3-202ENST00000355477 NBEAQ8NFP9 2946 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 A0A0U1RQS6 177 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 A0A1W2PQ67 120 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 ZNF487B1APH4 448 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 CELA2BP08218 269 aaPredicted RBP18.43■□□□□ 0.54
CLN3-202ENST00000355477 TNNT1P13805 278 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 JUPP14923 745 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms