RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 IFRD2Q12894 506 aaPredicted RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 SLC12A1Q13621 1099 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 TUBA3CQ13748 450 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 CAPRIN1Q14444 709 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 PRPSAP1Q14558 356 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 INPP5AQ14642 412 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 CBX2Q14781 532 aaPredicted RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 ACAP2Q15057 778 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 UGT3A2Q3SY77 523 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 JADE1Q6IE81 842 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 MPZL3Q6UWV2 235 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 FRA10AC1Q70Z53 315 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 PID1Q7Z2X4 250 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 PIWIL4Q7Z3Z4 852 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 ITIH5Q86UX2 942 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 DNAAF3Q8N9W5 541 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 TRPV3Q8NET8 790 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 IL12RB2Q99665 862 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 LPIN3Q9BQK8 851 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 BEGAINQ9BUH8 593 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 MLPHQ9BV36 600 aaPredicted RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 FUNDC2Q9BWH2 189 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 RHOJQ9H4E5 214 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 LRRC4Q9HBW1 653 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 SPON1Q9HCB6 807 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 CYP4F12Q9HCS2 524 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 POLE4Q9NR33 117 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 ZNF70Q9UC06 446 aaPredicted RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 MTF2Q9Y483 593 aaPredicted RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 NME7Q9Y5B8 376 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 TCRBV5S2A0A599 114 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 LACTBL1A8MY62 500 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 GJB1P08034 283 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 HSD17B1P14061 328 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 IL7RP16871 459 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 CAPN3P20807 821 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 GPX3P22352 226 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 PAX3P23760 479 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 EEF1DP29692 281 aaKnown RBP6.82□□□□□ -1.32
VPS39-202ENST00000348544 LEPRP48357 1165 aaKnown RBP6.82□□□□□ -1.32
VPS39-202ENST00000348544 PCYT1AP49585 367 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 HNRNPFP52597 415 aaKnown RBP6.82□□□□□ -1.32
VPS39-202ENST00000348544 EFNA5P52803 228 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 CLCQ05315 142 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 PIGFQ07326 219 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 LAMTOR4Q0VGL1 99 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 DPY19L1Q2PZI1 675 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 ARL13BQ3SXY8 428 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 ZIK1Q3SY52 487 aaPredicted RBP6.82□□□□□ -1.32
VPS39-202ENST00000348544 BROXQ5VW32 411 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 KCTD11Q693B1 232 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 IQSEC1Q6DN90 963 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 SMYD5Q6GMV2 418 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 FAM131BQ86XD5 332 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 PSTKQ8IV42 348 aaKnown RBP6.82□□□□□ -1.32
VPS39-202ENST00000348544 SFRP1Q8N474 314 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 C7orf31Q8N865 590 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 RNF149Q8NC42 400 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 SMG8Q8ND04 991 aaKnown RBP6.82□□□□□ -1.32
VPS39-202ENST00000348544 DNERQ8NFT8 737 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 SLC22A17Q8WUG5 538 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 ROPN1LQ96C74 230 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 ATG4CQ96DT6 458 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 C3orf30Q96M34 536 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 TSNARE1Q96NA8 513 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 CDT1Q9H211 546 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 CYP3A43Q9HB55 503 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 BFARQ9NZS9 450 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 HACD3Q9P035 362 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 ACTR3BQ9P1U1 418 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 ZNF639Q9UID6 485 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 TRPC5Q9UL62 973 aaPredicted RBP6.82□□□□□ -1.32
VPS39-202ENST00000348544 ACOT9Q9Y305 439 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 ZFC3H1O60293 1989 aaKnown RBP6.82□□□□□ -1.32
VPS39-202ENST00000348544 YDJCA8MPS7 323 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 NR5A2O00482 541 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 UBFD1O14562 309 aaKnown RBP6.82□□□□□ -1.32
VPS39-202ENST00000348544 MAFO75444 373 aaPredicted RBP6.82□□□□□ -1.32
VPS39-202ENST00000348544 ALOX5P09917 674 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 BMP4P12644 408 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 NCK1P16333 377 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 SLC6A2P23975 617 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 CRHBPP24387 322 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 PTPN3P26045 913 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 NKX2-5P52952 324 aaPredicted RBP6.82□□□□□ -1.32
VPS39-202ENST00000348544 IGBP1P78318 339 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 INAQ16352 499 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 CTF1Q16619 201 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 CYP51A1Q16850 503 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 CLEC6AQ6EIG7 209 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 CRTC3Q6UUV7 619 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 LARP4Q71RC2 724 aaKnown RBP eCLIP6.82□□□□□ -1.32
VPS39-202ENST00000348544 SLC26A9Q7LBE3 791 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 R3HCC1LQ7Z5L2 792 aaKnown RBP6.82□□□□□ -1.32
VPS39-202ENST00000348544 CUZD1Q86UP6 607 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 DENND6AQ8IWF6 608 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 SPARTQ8N0X7 666 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 LRRC71Q8N4P6 559 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.82□□□□□ -1.32
VPS39-202ENST00000348544 NSUN6Q8TEA1 469 aaKnown RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms