RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 ARMCX6Q7L4S7 300 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 CMC1Q7Z7K0 106 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 MICALL1Q8N3F8 863 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 DCLK2Q8N568 766 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 CCDC63Q8NA47 563 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 DRAXINQ8NBI3 349 aaPredicted RBP9.31□□□□□ -0.92
ATG4A-202ENST00000345734 ACVR1CQ8NER5 493 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 PPHLN1Q8NEY8 458 aaKnown RBP9.31□□□□□ -0.92
ATG4A-202ENST00000345734 ZNF483Q8TF39 744 aaPredicted RBP9.31□□□□□ -0.92
ATG4A-202ENST00000345734 RBBP8Q99708 897 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 SEMA3CQ99985 751 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 SUV39H2Q9H5I1 410 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 IGFLR1Q9H665 355 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 MANSC1Q9H8J5 431 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 SRA1Q9HD15 236 aaKnown RBP9.31□□□□□ -0.92
ATG4A-202ENST00000345734 MKS1Q9NXB0 559 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 UXTQ9UBK9 157 aaPredicted RBP9.31□□□□□ -0.92
ATG4A-202ENST00000345734 PRKAG3Q9UGI9 489 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 MTO1Q9Y2Z2 717 aaKnown RBP9.31□□□□□ -0.92
ATG4A-202ENST00000345734 MTCL1Q9Y4B5 1905 aaKnown RBP9.31□□□□□ -0.92
ATG4A-202ENST00000345734 CCT8L1PA6NM43 557 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 GREM1O60565 184 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 CLDN11O75508 207 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 SNUPNO95149 360 aaKnown RBP9.31□□□□□ -0.92
ATG4A-202ENST00000345734 ARNTP27540 789 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 HNRNPH1P31943 449 aaKnown RBP9.31□□□□□ -0.92
ATG4A-202ENST00000345734 PPP3CCP48454 512 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 IRX4P78413 519 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 SMAD3P84022 425 aaKnown RBP9.31□□□□□ -0.92
ATG4A-202ENST00000345734 MLLT1Q03111 559 aaPredicted RBP9.31□□□□□ -0.92
ATG4A-202ENST00000345734 CNGA3Q16281 694 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 FSTL4Q6MZW2 842 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 CCDC121Q6ZUS5 278 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 GAREM2Q75VX8 874 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 OTOAQ7RTW8 1153 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 YTHDF3Q7Z739 585 aaKnown RBP9.31□□□□□ -0.92
ATG4A-202ENST00000345734 CCT6BQ92526 530 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 TADA1Q96BN2 335 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 MAGEH1Q9H213 219 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 CAB39LQ9H9S4 337 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 VPS45Q9NRW7 570 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 ABCF3Q9NUQ8 709 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 CHCHD3Q9NX63 227 aaKnown RBP9.31□□□□□ -0.92
ATG4A-202ENST00000345734 STARD13Q9Y3M8 1113 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 PCDHGC4Q9Y5F7 938 aa9.31□□□□□ -0.92
ATG4A-202ENST00000345734 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.3□□□□□ -0.92
ATG4A-202ENST00000345734 VAPBO95292 243 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 RHOCP08134 193 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 FAM157BP0CG42 384 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 GJA1P17302 382 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 HDCP19113 662 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 GABRR2P28476 465 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 SPRP35270 261 aaPredicted RBP9.3□□□□□ -0.92
ATG4A-202ENST00000345734 ARCN1P48444 511 aaKnown RBP9.3□□□□□ -0.92
ATG4A-202ENST00000345734 SERPINH1P50454 418 aaKnown RBP9.3□□□□□ -0.92
ATG4A-202ENST00000345734 LIMK2P53671 638 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 OXCT1P55809 520 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 ERVFC1P60507 584 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 FPGSQ05932 587 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 TNP2Q05952 138 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 SPEM2Q0P670 501 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 ZNF177Q13360 481 aaPredicted RBP9.3□□□□□ -0.92
ATG4A-202ENST00000345734 MSLNQ13421 630 aaPredicted RBP9.3□□□□□ -0.92
ATG4A-202ENST00000345734 ZNF235Q14590 738 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 SIRPB2Q5JXA9 342 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 TMEM240Q5SV17 173 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 CES4AQ5XG92 561 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 PDPK2PQ6A1A2 396 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 LILRA6Q6PI73 481 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 CHST9Q7L1S5 443 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 ITIH5Q86UX2 942 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 TMC8Q8IU68 726 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 CCDC117Q8IWD4 279 aaPredicted RBP9.3□□□□□ -0.92
ATG4A-202ENST00000345734 RMDN2Q96LZ7 410 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 NSMCE3Q96MG7 304 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 MCMBPQ9BTE3 642 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 POLR1EQ9GZS1 481 aaKnown RBP9.3□□□□□ -0.92
ATG4A-202ENST00000345734 ARNT2Q9HBZ2 717 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 MRM3Q9HC36 420 aaKnown RBP9.3□□□□□ -0.92
ATG4A-202ENST00000345734 SNX15Q9NRS6 342 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 TREX1Q9NSU2 369 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 EMCNQ9ULC0 261 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 INSL6Q9Y581 213 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 CPQQ9Y646 472 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 C5orf42Q9H799 3197 aa9.3□□□□□ -0.92
ATG4A-202ENST00000345734 CCDC195A0A1B0GUA6 201 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 A0A1B0GVM2 712 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 ILVBLA1L0T0 632 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 TCAF2A6NFQ2 919 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 HIDE1A8MVS5 230 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 HGSO14964 777 aaPredicted RBP9.29□□□□□ -0.92
ATG4A-202ENST00000345734 KDELR3O43731 214 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 TBL1XO60907 577 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 OLFM2O95897 454 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 C8AP07357 584 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 ATXN1LP0C7T5 689 aaKnown RBP9.29□□□□□ -0.92
ATG4A-202ENST00000345734 IMPDH2P12268 514 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 GABRB3P28472 473 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 TYK2P29597 1187 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 RGRP47804 291 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms