RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 RP9Q8TA86 221 aaKnown RBP19.45■□□□□ 0.7
COL9A3-201ENST00000343916 FATE1Q969F0 183 aa19.45■□□□□ 0.7
COL9A3-201ENST00000343916 UBXN10Q96LJ8 280 aa19.45■□□□□ 0.7
COL9A3-201ENST00000343916 ALG9Q9H6U8 611 aa19.45■□□□□ 0.7
COL9A3-201ENST00000343916 ZBTB26Q9HCK0 441 aa19.45■□□□□ 0.7
COL9A3-201ENST00000343916 OLA1Q9NTK5 396 aaKnown RBP19.45■□□□□ 0.7
COL9A3-201ENST00000343916 CASP8AP2Q9UKL3 1982 aa19.45■□□□□ 0.7
COL9A3-201ENST00000343916 TET1Q8NFU7 2136 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 LOC285095A0A1B0GVY8 99 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 SDHDO14521 159 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 SLC7A4O43246 635 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 AOC2O75106 756 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 RTN3O95197 1032 aaPredicted RBP19.44■□□□□ 0.7
COL9A3-201ENST00000343916 PAPSS2O95340 614 aaPredicted RBP19.44■□□□□ 0.7
COL9A3-201ENST00000343916 FESP07332 822 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 TSPAN8P19075 237 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 SLC11A1P49279 550 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 PFKPQ01813 784 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 CPSF7Q8N684 471 aaKnown RBP19.44■□□□□ 0.7
COL9A3-201ENST00000343916 KYQ8NBH2 561 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 OR52K2Q8NGK3 314 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 TADA1Q96BN2 335 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 DNAJC1Q96KC8 554 aaKnown RBP19.44■□□□□ 0.7
COL9A3-201ENST00000343916 MFSD1Q9H3U5 465 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 OR6C75A6NL08 312 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 CFLARO15519 480 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 NBNO60934 754 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 ALDH2P05091 517 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 DNAJB13P59910 316 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 PARP15Q460N3 678 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 PRSS55Q6UWB4 352 aaPredicted RBP19.44■□□□□ 0.7
COL9A3-201ENST00000343916 LGI2Q8N0V4 545 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 OR13C4Q8NGS5 318 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 USP13Q92995 863 aaPredicted RBP19.44■□□□□ 0.7
COL9A3-201ENST00000343916 IFT43Q96FT9 208 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 CASD1Q96PB1 797 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 CDRT15Q96T59 188 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 ECSITQ9BQ95 431 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 POLR1EQ9GZS1 481 aaKnown RBP19.44■□□□□ 0.7
COL9A3-201ENST00000343916 PCDHB7Q9Y5E2 793 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 GREB1Q4ZG55 1949 aa19.44■□□□□ 0.7
COL9A3-201ENST00000343916 ENO3P13929 434 aaPredicted RBP19.43■□□□□ 0.7
COL9A3-201ENST00000343916 RAG1P15918 1043 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 TACR2P21452 398 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 FGFR3P22607 806 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 PKNOX1P55347 436 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 C1QTNF8P60827 252 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 GPR17Q13304 367 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 ZNF235Q14590 738 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 OR52E8Q6IFG1 317 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 FUT10Q6P4F1 479 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 KLC3Q6P597 504 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 SLC30A9Q6PML9 568 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 LRRC8DQ7L1W4 858 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 CCDC28BQ9BUN5 200 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.43■□□□□ 0.78e-8■■■■■ 27.1
COL9A3-201ENST00000343916 VCXQ9H320 206 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP19.43■□□□□ 0.7
COL9A3-201ENST00000343916 STX16-NPEPL1H3BU86 382 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 ENPP3O14638 875 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 AHCYL1O43865 530 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 GOT2P00505 430 aaKnown RBP19.43■□□□□ 0.7
COL9A3-201ENST00000343916 CALRP27797 417 aaKnown RBP19.43■□□□□ 0.7
COL9A3-201ENST00000343916 SLC6A4P31645 630 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 THOP1P52888 689 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 SEMA3AQ14563 771 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 GPNMBQ14956 572 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 C11orf91Q3C1V1 193 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 MAELQ96JY0 434 aaKnown RBP19.43■□□□□ 0.7
COL9A3-201ENST00000343916 SH3GL3Q99963 347 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 SCOCQ9UIL1 159 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 ASB3Q9Y575 518 aa19.43■□□□□ 0.7
COL9A3-201ENST00000343916 MOXD2PA6NHM9 499 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 PRAMEF11O60813 436 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 PRSS56P0CW18 603 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 ATF6P18850 670 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 DPP6P42658 865 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 ACAP2Q15057 778 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 SLC14A2Q15849 920 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 PPP1R3AQ16821 1122 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 CUZD1Q86UP6 607 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 OR7D4Q8NG98 312 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 GABPB2Q8TAK5 448 aaPredicted RBP19.42■□□□□ 0.7
COL9A3-201ENST00000343916 JADE3Q92613 823 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 EXT2Q93063 718 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 TSPAN17Q96FV3 270 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 NPAS2Q99743 824 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 PAPOLBQ9NRJ5 636 aaKnown RBP19.42■□□□□ 0.7
COL9A3-201ENST00000343916 MT-CO1P00395 513 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 PEX2P28328 305 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 ATXN3P54252 364 aaPredicted RBP19.42■□□□□ 0.7
COL9A3-201ENST00000343916 RYBPQ8N488 228 aaPredicted RBP19.42■□□□□ 0.7
COL9A3-201ENST00000343916 SNX31Q8N9S9 440 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 SPPL2BQ8TCT7 592 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 EXOC2Q96KP1 924 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 SRRDQ9UH36 339 aa19.42■□□□□ 0.7
COL9A3-201ENST00000343916 LAMA2P24043 3122 aaKnown RBP19.41■□□□□ 0.7
COL9A3-201ENST00000343916 TRPC5OSA6NMA1 111 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 H3BNX3 289 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 ADAM12O43184 909 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms