RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 GGT7Q9UJ14 662 aa22.27■■□□□ 1.16
SDC3-202ENST00000339394 SNX24Q9Y343 169 aa22.27■■□□□ 1.16
SDC3-202ENST00000339394 A8MX80 341 aa22.26■■□□□ 1.15
SDC3-202ENST00000339394 NEMP1O14524 444 aa22.26■■□□□ 1.15
SDC3-202ENST00000339394 AP1G1O43747 822 aa22.26■■□□□ 1.15
SDC3-202ENST00000339394 FGF1P05230 155 aa22.26■■□□□ 1.15
SDC3-202ENST00000339394 SP9P0CG40 484 aa22.26■■□□□ 1.15
SDC3-202ENST00000339394 ELP6Q0PNE2 266 aa22.26■■□□□ 1.15
SDC3-202ENST00000339394 DUPD1Q68J44 220 aa22.26■■□□□ 1.15
SDC3-202ENST00000339394 PCGF5Q86SE9 256 aa22.26■■□□□ 1.15
SDC3-202ENST00000339394 PPIL6Q8IXY8 311 aa22.26■■□□□ 1.15
SDC3-202ENST00000339394 RAB17Q9H0T7 212 aa22.26■■□□□ 1.15
SDC3-202ENST00000339394 PIH1D1Q9NWS0 290 aaKnown RBP22.26■■□□□ 1.15
SDC3-202ENST00000339394 B4GALT6Q9UBX8 382 aa22.26■■□□□ 1.15
SDC3-202ENST00000339394 MYO15AQ9UKN7 3530 aa22.26■■□□□ 1.15
SDC3-202ENST00000339394 NPIPB15A6NHN6 443 aaPredicted RBP22.25■■□□□ 1.15
SDC3-202ENST00000339394 FAM47DPA6NHR8 397 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 TMEM63AO94886 807 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 SEC31AO94979 1220 aaKnown RBP22.25■■□□□ 1.15
SDC3-202ENST00000339394 PIRTP0C851 137 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 NFKBIAP25963 317 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 MMP12P39900 470 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 RPL21P46778 160 aaKnown RBP22.25■■□□□ 1.15
SDC3-202ENST00000339394 IZUMO3Q5VZ72 239 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 OR52K1Q8NGK4 314 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 SNF8Q96H20 258 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 SPACA7Q96KW9 195 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 LYSMD1Q96S90 227 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 DPH5Q9H2P9 285 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 KDM4CQ9H3R0 1056 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 MBD1Q9UIS9 605 aaPredicted RBP22.25■■□□□ 1.15
SDC3-202ENST00000339394 TBC1D3DA0A087WVF3 549 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 TBC1D3IA0A087WXS9 549 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 TBC1D3EA0A087X179 549 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 TBC1D3KA0A087X1G2 549 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 A0A0U1RQS6 177 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 TBC1D3FA6NER0 549 aaPredicted RBP22.25■■□□□ 1.15
SDC3-202ENST00000339394 CAPN8A6NHC0 703 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 TBC1D3LB9A6J9 549 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 HEXIM1O94992 359 aaKnown RBP22.25■■□□□ 1.15
SDC3-202ENST00000339394 SEMA4FO95754 770 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 TBC1D3HP0C7X1 549 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 TBC1D3GQ6DHY5 549 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 TBC1D3CQ6IPX1 549 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 PPP1R21Q6ZMI0 780 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 DPPA4Q7L190 304 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 TBC1D3Q8IZP1 549 aaPredicted RBP22.25■■□□□ 1.15
SDC3-202ENST00000339394 DNAAF3Q8N9W5 541 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 MAGEE1Q9HCI5 957 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 RRAGDQ9NQL2 400 aaPredicted RBP22.25■■□□□ 1.15
SDC3-202ENST00000339394 ZSCAN32Q9NX65 697 aa22.25■■□□□ 1.15
SDC3-202ENST00000339394 DMGDHQ9UI17 866 aaKnown RBP22.25■■□□□ 1.15
SDC3-202ENST00000339394 PRR23AA6NEV1 266 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 LRRC72A6NJI9 287 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 TP73O15350 636 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 TSPAN6O43657 245 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 PCDH8O95206 1070 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 LHCGRP22888 699 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 CDH17Q12864 832 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 RALGDSQ12967 914 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 MSLNQ13421 630 aaPredicted RBP22.24■■□□□ 1.15
SDC3-202ENST00000339394 CRTC1Q6UUV9 634 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 ZNF534Q76KX8 674 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 TSPAN33Q86UF1 283 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 OR2T34Q8NGX1 318 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 GPR174Q9BXC1 333 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 PREBQ9HCU5 417 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 CASS4Q9NQ75 786 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 SPO11Q9Y5K1 396 aa22.24■■□□□ 1.15
SDC3-202ENST00000339394 GOLGA8MH3BSY2 632 aa22.23■■□□□ 1.15
SDC3-202ENST00000339394 SLU7O95391 586 aaKnown RBP22.23■■□□□ 1.15
SDC3-202ENST00000339394 CYP2A6P11509 494 aaPredicted RBP22.23■■□□□ 1.15
SDC3-202ENST00000339394 TPH1P17752 444 aa22.23■■□□□ 1.15
SDC3-202ENST00000339394 VIPR1P32241 457 aa22.23■■□□□ 1.15
SDC3-202ENST00000339394 ITGA8P53708 1063 aa22.23■■□□□ 1.15
SDC3-202ENST00000339394 SARNPP82979 210 aaKnown RBP22.23■■□□□ 1.15
SDC3-202ENST00000339394 GUCY2DQ02846 1103 aa22.23■■□□□ 1.15
SDC3-202ENST00000339394 TRADDQ15628 312 aa22.23■■□□□ 1.15
SDC3-202ENST00000339394 CDKN3Q16667 212 aa22.23■■□□□ 1.15
SDC3-202ENST00000339394 TMEM52BQ4KMG9 183 aa22.23■■□□□ 1.15
SDC3-202ENST00000339394 HIBCHQ6NVY1 386 aaPredicted RBP22.23■■□□□ 1.15
SDC3-202ENST00000339394 HOOK3Q86VS8 718 aa22.23■■□□□ 1.15
SDC3-202ENST00000339394 ZBTB44Q8NCP5 570 aa22.23■■□□□ 1.15
SDC3-202ENST00000339394 MCUQ8NE86 351 aa22.23■■□□□ 1.15
SDC3-202ENST00000339394 BLOC1S5Q8TDH9 187 aa22.23■■□□□ 1.15
SDC3-202ENST00000339394 WRAP53Q9BUR4 548 aaKnown RBP22.23■■□□□ 1.15
SDC3-202ENST00000339394 SHOC2Q9UQ13 582 aa22.23■■□□□ 1.15
SDC3-202ENST00000339394 KMT2EQ8IZD2 1858 aa22.22■■□□□ 1.15
SDC3-202ENST00000339394 RPP40O75818 363 aaKnown RBP22.22■■□□□ 1.15
SDC3-202ENST00000339394 BCKDHBP21953 392 aa22.22■■□□□ 1.15
SDC3-202ENST00000339394 LIG3P49916 1009 aa22.22■■□□□ 1.15
SDC3-202ENST00000339394 DRG2P55039 364 aaKnown RBP22.22■■□□□ 1.15
SDC3-202ENST00000339394 SRSF5Q13243 272 aaKnown RBP22.22■■□□□ 1.15
SDC3-202ENST00000339394 MORF4L2Q15014 288 aa22.22■■□□□ 1.15
SDC3-202ENST00000339394 LRRC66Q68CR7 880 aa22.22■■□□□ 1.15
SDC3-202ENST00000339394 NEK5Q6P3R8 708 aa22.22■■□□□ 1.15
SDC3-202ENST00000339394 LRRC8BQ6P9F7 803 aa22.22■■□□□ 1.15
SDC3-202ENST00000339394 GAB3Q8WWW8 586 aa22.22■■□□□ 1.15
SDC3-202ENST00000339394 SEC14L1Q92503 715 aa22.22■■□□□ 1.15
SDC3-202ENST00000339394 C6orf106Q9H6K1 298 aaPredicted RBP22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms