RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PPP2R2BQ00005 443 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 AMIGO2Q86SJ2 522 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 SLC4A9Q96Q91 983 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 BTBD3Q9Y2F9 522 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 CCDC182A6NF36 153 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 CXCL11O14625 94 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 GABRR2P28476 465 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 PSMD8P48556 350 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 STARP49675 285 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 CASP9P55211 416 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 SMAD3P84022 425 aaKnown RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 ULK2Q8IYT8 1036 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 NKAPQ8N5F7 415 aaKnown RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 APBB2Q92870 758 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 CNPPD1Q9BV87 410 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 ADCY10Q96PN6 1610 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 SNRPB2P08579 225 aaKnown RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 GIMD1P0DJR0 217 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 MYL9P24844 172 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 MAMLD1Q13495 774 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 PAGE2Q7Z2X7 111 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 KCNK18Q7Z418 384 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 GALNT5Q7Z7M9 940 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 ZCCHC9Q8N567 271 aaKnown RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 FAM192AQ9GZU8 254 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 CD163L1Q9NR16 1453 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 CDC42BPBQ9Y5S2 1711 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 A0A075B6Q4 140 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 A0A0A0MRY4 1105 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 URADA6NGE7 173 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 LYPLA1O75608 230 aaPredicted RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 MATN4O95460 622 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 ATP5F1P24539 256 aaPredicted RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 MSX2P35548 267 aaPredicted RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 LIN54Q6MZP7 749 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 KAT2AQ92830 837 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 UBE2E3Q969T4 207 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 CERS2Q96G23 380 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 SPATA13Q96N96 652 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 INTS7Q9NVH2 962 aaKnown RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 UBE2QL1A1L167 161 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 TIPRLO75663 272 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 RECQL5O94762 991 aaPredicted RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 MAPTP10636 758 aaKnown RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 IGFALSP35858 605 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 BRCC3P46736 316 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 MANFP55145 182 aaKnown RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 PPP3CAQ08209 521 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 MTA1Q13330 715 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 SF1Q15637 639 aaKnown RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 SWT1Q5T5J6 900 aaKnown RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 FBXO42Q6P3S6 717 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 TSPAN14Q8NG11 270 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 OR7A2PQ8NGA2 310 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 FAM84AQ96KN4 292 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 C5orf34Q96MH7 638 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 RPS6KA6Q9UK32 745 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 HPSEQ9Y251 543 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 INO80Q9ULG1 1556 aaPredicted RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 MSI1O43347 362 aaKnown RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 RASGRP1O95267 797 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 ADRB2P07550 413 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 MAGP20916 626 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 STAT5AP42229 794 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 CASP5P51878 434 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 MC1RQ01726 317 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 GCNT1Q02742 428 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 CBX2Q14781 532 aaPredicted RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 PSMD5Q16401 504 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 USP41Q3LFD5 358 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 GPRIN3Q6ZVF9 776 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 CROCCP3Q8IVE0 287 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 RAVER1Q8IY67 606 aaKnown RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 SETD6Q8TBK2 473 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 SLC47A1Q96FL8 570 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 ZFRQ96KR1 1074 aaKnown RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 FCRL4Q96PJ5 515 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 ASB2Q96Q27 587 aa12.66□□□□□ -0.38
SDC3-201ENST00000336798 SAMHD1Q9Y3Z3 626 aaKnown RBP12.66□□□□□ -0.38
SDC3-201ENST00000336798 PREX2Q70Z35 1606 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 TET3O43151 1660 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 B4GALT5O43286 388 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 TMCC2O75069 709 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 PSMG1O95456 288 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 TKTP29401 623 aaKnown RBP12.65□□□□□ -0.38
SDC3-201ENST00000336798 TTPAP49638 278 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 CDK7P50613 346 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 MSLNQ13421 630 aaPredicted RBP12.65□□□□□ -0.38
SDC3-201ENST00000336798 KYAT3Q6YP21 454 aaKnown RBP12.65□□□□□ -0.38
SDC3-201ENST00000336798 PIGZQ86VD9 579 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 MECRQ9BV79 373 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 MARCH7Q9H992 704 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 HMG20AQ9NP66 347 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 RABL2AQ9UBK7 228 aaPredicted RBP12.65□□□□□ -0.38
SDC3-201ENST00000336798 AGO1Q9UL18 857 aaKnown RBP12.65□□□□□ -0.38
SDC3-201ENST00000336798 NDRG2Q9UN36 371 aaKnown RBP12.65□□□□□ -0.38
SDC3-201ENST00000336798 L1RE1Q9UN81 338 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 SLC28A1O00337 649 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 PRLP01236 227 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 GLRA2P23416 452 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms