RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 GMPSP49915 693 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 LAMTOR4Q0VGL1 99 aa13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 GRSF1Q12849 480 aaKnown RBP eCLIP13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 ZBTB17Q13105 803 aa13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 POLD3Q15054 466 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 VASH1Q7L8A9 365 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 MICALL2Q8IY33 904 aa13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 CENPNQ96H22 339 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 GPR78Q96P69 363 aa13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 PCYT2Q99447 389 aa13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 BEGAINQ9BUH8 593 aa13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 MYOZ2Q9NPC6 264 aa13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 SMPD3Q9NY59 655 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 PKD2L2Q9NZM6 624 aa13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 LRRC37AA6NMS7 1700 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 TIMM44O43615 452 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 RASAL1O95294 804 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 HLCSP50747 726 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 PRKAA2P54646 552 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 GHRHRQ02643 423 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 CAMK2BQ13554 666 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 INAQ16352 499 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 AMHR2Q16671 573 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 ADGRG5Q8IZF4 528 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 HPDLQ96IR7 371 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 C9orf16Q9BUW7 83 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 MINDY3Q9H8M7 445 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 PALMDQ9NP74 551 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 CHST12Q9NRB3 414 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 ITM2BQ9Y287 266 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 MRPL42Q9Y6G3 142 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 TRPC5OSA6NMA1 111 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 CLDN25C9JDP6 229 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 H0Y858 1186 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 ZBTB24O43167 697 aaPredicted RBP13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 GMNNO75496 209 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 SEC14L2O76054 403 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 MBL2P11226 248 aaPredicted RBP13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 PSMA4P25789 261 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 TKTP29401 623 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 RPS9P46781 194 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 SQLEQ14534 574 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 FUT11Q495W5 492 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 LCLAT1Q6UWP7 414 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 FAM151AQ8WW52 585 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 ZNF347Q96SE7 839 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 HGH1Q9BTY7 390 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 FUNDC2Q9BWH2 189 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 ALOXE3Q9BYJ1 711 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 MRPL40Q9NQ50 206 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 TLR9Q9NR96 1032 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 CMTM6Q9NX76 183 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 USP3Q9Y6I4 520 aa13.51□□□□□ -0.25
CCDC88C-201ENST00000331194 B4GALT4O60513 344 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 ALDOCP09972 364 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 IQCF3P0C7M6 154 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 TMBIM6P55061 237 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 PPIL2Q13356 520 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 GTF2IRD2BQ6EKJ0 949 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 CRTC3Q6UUV7 619 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 CYHR1Q6ZMK1 362 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 GTF2IRD2Q86UP8 949 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 PDZD8Q8NEN9 1154 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 DNERQ8NFT8 737 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 HEXDCQ8WVB3 486 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 CAPSLQ8WWF8 208 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 GMLQ99445 158 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 GPR22Q99680 433 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 CXCL16Q9H2A7 254 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 RPAP3Q9H6T3 665 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 RPF1Q9H9Y2 349 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 ACOT9Q9Y305 439 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 MTF2Q9Y483 593 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 NME7Q9Y5B8 376 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 AURKAO14965 403 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 HTR1BP28222 390 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 GRM1Q13255 1194 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 KIF19Q2TAC6 998 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 RABL3Q5HYI8 236 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 CCNYL2Q5T2Q4 361 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 ATF7IP2Q5U623 682 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 ANKRD34AQ69YU3 496 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 IQSEC1Q6DN90 963 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 C8orf82Q6P1X6 216 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 RNF19BQ6ZMZ0 732 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 R3HCC1LQ7Z5L2 792 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 DNAJB14Q8TBM8 379 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 DNAI2Q9GZS0 605 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 SNX25Q9H3E2 840 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 ATP13A3Q9H7F0 1226 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 VTA1Q9NP79 307 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 B3GNT3Q9Y2A9 372 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 DPYSL4O14531 572 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 ARPC2O15144 300 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 CPNE6O95741 557 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 MAGP20916 626 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 ARL4AP40617 200 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 SLC12A1Q13621 1099 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 CSHL1Q14406 222 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 PAGE2BQ5JRK9 111 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms