RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 MINDY4Q4G0A6 757 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 GLOD4Q9HC38 313 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 ZC4H2Q9NQZ6 224 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 GKN1Q9NS71 199 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 LIMD1Q9UGP4 676 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 SNAI1O95863 264 aaPredicted RBP13.54□□□□□ -0.24
RFFL-201ENST00000315249 ADH5P11766 374 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 DSC2Q02487 901 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 LRRC38Q5VT99 294 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 ICE2Q659A1 982 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 TAC4Q86UU9 113 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 LRRC39Q96DD0 335 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 THAP1Q9NVV9 213 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 INVSQ9Y283 1065 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 URB1O60287 2271 aaKnown RBP13.54□□□□□ -0.24
RFFL-201ENST00000315249 H3BN98 237 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 PTPN9P43378 593 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 APTXQ7Z2E3 356 aaKnown RBP13.54□□□□□ -0.24
RFFL-201ENST00000315249 ZC3H7AQ8IWR0 971 aaKnown RBP13.54□□□□□ -0.24
RFFL-201ENST00000315249 HOMEZQ8IX15 550 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 TRIB2Q92519 343 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 REXO5Q96IC2 774 aaKnown RBP13.54□□□□□ -0.24
RFFL-201ENST00000315249 IQCF5A8MTL0 148 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 TM7SF2O76062 418 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 PRKAA2P54646 552 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 FBXO46Q6PJ61 603 aaPredicted RBP13.54□□□□□ -0.24
RFFL-201ENST00000315249 MMAAQ8IVH4 418 aaKnown RBP13.54□□□□□ -0.24
RFFL-201ENST00000315249 STARD8Q92502 1023 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 BCAS3Q9H6U6 928 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 VPS45Q9NRW7 570 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 SLC9A8Q9Y2E8 581 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 PIGNO95427 931 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 ALDH4A1P30038 563 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 AAK1Q2M2I8 961 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 METTL21AQ8WXB1 218 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 HNRNPABQ99729 332 aaKnown RBP13.54□□□□□ -0.24
RFFL-201ENST00000315249 TRIT1Q9H3H1 467 aaKnown RBP13.54□□□□□ -0.24
RFFL-201ENST00000315249 TBC1D30Q9Y2I9 924 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 CPED1A4D0V7 1026 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 FPGTO14772 594 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 NAB1Q13506 487 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 TEAD2Q15562 447 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 DLG2Q15700 870 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 TXNDC8Q6A555 127 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 C17orf64Q86WR6 236 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 MARK4Q96L34 752 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 ATAD3AQ9NVI7 634 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 OSER1Q9NX31 292 aa13.54□□□□□ -0.24
RFFL-201ENST00000315249 BMP6P22004 513 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 MMP8P22894 467 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 MEA1Q16626 185 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 TIFAQ96CG3 184 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 MCCC1Q96RQ3 725 aaPredicted RBP13.53□□□□□ -0.24
RFFL-201ENST00000315249 TMEM245Q9H330 911 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 DNAJC28Q9NX36 388 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 YIPF1Q9Y548 306 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 A0A0U1RQF3 1178 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 AP5Z1O43299 807 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 SPAM1P38567 509 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 MAGEA9P43362 315 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 SERPINB10P48595 397 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 ARSIQ5FYB1 569 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 PYROXD2Q8N2H3 581 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 CCDC185Q8N715 623 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 ZNF366Q8N895 744 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 HEXDCQ8WVB3 486 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 TNFRSF25Q93038 417 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 MRPL48Q96GC5 212 aaKnown RBP13.53□□□□□ -0.24
RFFL-201ENST00000315249 FUCA2Q9BTY2 467 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 ASB3Q9Y575 518 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 MFSD11O43934 449 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 PRMT3O60678 531 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 LRATO95237 230 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 CCNDBP1O95273 360 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 RAB10P61026 200 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 JAG1P78504 1218 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 ADAMTSL2Q86TH1 951 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 SCAIQ8N9R8 606 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 VPS33AQ96AX1 596 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 ASB2Q96Q27 587 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 ITPKAP23677 461 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 NAGLUP54802 743 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 TRIM32Q13049 653 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 KRT73Q86Y46 540 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 FAM20CQ8IXL6 584 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 CDYL2Q8N8U2 506 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 HDAC7Q8WUI4 952 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 RAD9AQ99638 391 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 KLC4Q9NSK0 619 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 PLIN4Q96Q06 1357 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 PEX11AO75192 247 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 VAV1P15498 845 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 CSKP41240 450 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 GNPDA1P46926 289 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 PRRG3Q9BZD7 231 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 SMG9Q9H0W8 520 aaKnown RBP13.53□□□□□ -0.24
RFFL-201ENST00000315249 BTRCQ9Y297 605 aa13.53□□□□□ -0.24
RFFL-201ENST00000315249 MORC2Q9Y6X9 1032 aaPredicted RBP13.52□□□□□ -0.24
RFFL-201ENST00000315249 ULK1O75385 1050 aa13.52□□□□□ -0.24
RFFL-201ENST00000315249 S100A5P33763 92 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms