RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 MX2P20592 715 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 HNRNPA2B1P22626 353 aaKnown RBP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 XPAP23025 273 aaPredicted RBP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 GRIA4P48058 902 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 NXPH1P58417 271 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 AP1S1P61966 158 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 IFI35P80217 286 aaPredicted RBP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 GSE1Q14687 1217 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 STAT4Q14765 748 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 PDK1Q15118 436 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 IRF4Q15306 451 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 CNGA3Q16281 694 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 TP53I13Q8NBR0 393 aaPredicted RBP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 LPCAT1Q8NF37 534 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 NETO1Q8TDF5 533 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 NSMCE1Q8WV22 266 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 TFB1MQ8WVM0 346 aaKnown RBP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 OXNAD1Q96HP4 312 aaPredicted RBP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 RBM41Q96IZ5 413 aaKnown RBP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 TUBGCP5Q96RT8 1024 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 LGR4Q9BXB1 951 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 TLR10Q9BXR5 811 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 TDRD1Q9BXT4 1180 aaKnown RBP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 TM7SF3Q9NS93 570 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 PRAMEF26H0Y7S4 382 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 H7C0C1 242 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 AP1G1O43747 822 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 NEBLO76041 1014 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 RECQL5O94762 991 aaPredicted RBP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 CPP00450 1065 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 PCCBP05166 539 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 CELA2BP08218 269 aaPredicted RBP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 ETV3P41162 512 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 ATP5OP48047 213 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 CLDN6P56747 220 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 KLF1Q13351 362 aaPredicted RBP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 TFDP2Q14188 446 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 PPP2R5EQ16537 467 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 TMEM52BQ4KMG9 183 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 SETMARQ53H47 684 aaPredicted RBP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 TEX44Q53QW1 395 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 MEI1Q5TIA1 1274 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 TIGD7Q6NT04 549 aaPredicted RBP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 PSAPL1Q6NUJ1 521 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 Q6ZVL8 140 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 PTAR1Q7Z6K3 402 aaPredicted RBP12.1□□□□□ -0.47
SCFD1-201ENST00000311943 RBFAQ8N0V3 343 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 PNPLA1Q8N8W4 532 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 CCDC112Q8NEF3 446 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 CCDC110Q8TBZ0 833 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 CXorf40AQ8TE69 158 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 AGAP2Q99490 1192 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 APOL2Q9BQE5 337 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 SUSD2Q9UGT4 822 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 TSPAN6O43657 245 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 KRT86O43790 486 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 TM7SF2O76062 418 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 CLDN7O95471 211 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 SLC4A1P02730 911 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 RBP3P10745 1247 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 SPINK2P20155 84 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 TGM2P21980 687 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 HOXD12P35452 270 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 C21orf59P57076 290 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 EIF3EP60228 445 aaKnown RBP12.09□□□□□ -0.47
SCFD1-201ENST00000311943 SGCGQ13326 291 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 PDE1CQ14123 709 aaPredicted RBP12.09□□□□□ -0.47
SCFD1-201ENST00000311943 INPP5AQ14642 412 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 FAXCQ5TGI0 409 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 CCDC181Q5TID7 509 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 ALG1LQ6GMV1 187 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 BRAT1Q6PJG6 821 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 CRTC1Q6UUV9 634 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 PID1Q7Z2X4 250 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 VSIG1Q86XK7 387 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 MARCH9Q86YJ5 346 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 SFTPA2Q8IWL1 248 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 GPR161Q8N6U8 529 aaKnown RBP12.09□□□□□ -0.47
SCFD1-201ENST00000311943 GLIS1Q8NBF1 620 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 C1orf54Q8WWF1 131 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 SCAMP4Q969E2 229 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 LENG8Q96PV6 779 aaPredicted RBP12.09□□□□□ -0.47
SCFD1-201ENST00000311943 MRPL40Q9NQ50 206 aaKnown RBP12.09□□□□□ -0.47
SCFD1-201ENST00000311943 SHOC2Q9UQ13 582 aa12.09□□□□□ -0.47
SCFD1-201ENST00000311943 APOC4-APOC2K7ER74 178 aa12.08□□□□□ -0.48
SCFD1-201ENST00000311943 PPP1R12AO14974 1030 aaPredicted RBP12.08□□□□□ -0.48
SCFD1-201ENST00000311943 BUD23O43709 281 aaKnown RBP12.08□□□□□ -0.48
SCFD1-201ENST00000311943 APOC2P02655 101 aa12.08□□□□□ -0.48
SCFD1-201ENST00000311943 PTMAP06454 111 aaKnown RBP12.08□□□□□ -0.48
SCFD1-201ENST00000311943 ETS1P14921 441 aa12.08□□□□□ -0.48
SCFD1-201ENST00000311943 PTSQ03393 145 aa12.08□□□□□ -0.48
SCFD1-201ENST00000311943 SFSWAPQ12872 951 aaKnown RBP12.08□□□□□ -0.48
SCFD1-201ENST00000311943 SNX1Q13596 522 aa12.08□□□□□ -0.48
SCFD1-201ENST00000311943 FZD2Q14332 565 aa12.08□□□□□ -0.48
SCFD1-201ENST00000311943 SPARCL1Q14515 664 aa12.08□□□□□ -0.48
SCFD1-201ENST00000311943 PTPRCAPQ14761 206 aa12.08□□□□□ -0.48
SCFD1-201ENST00000311943 ARMC12Q5T9G4 340 aa12.08□□□□□ -0.48
SCFD1-201ENST00000311943 LRRC66Q68CR7 880 aa12.08□□□□□ -0.48
SCFD1-201ENST00000311943 KIAA1161Q6NSJ0 714 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms