RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 AP5B1Q2VPB7 878 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 IL27RAQ6UWB1 636 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 PHF10Q8WUB8 498 aaKnown RBP12.11□□□□□ -0.47
PCF11-201ENST00000298281 OSMRQ99650 979 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 STRA6Q9BX79 667 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 PDE2AO00408 941 aaPredicted RBP12.11□□□□□ -0.47
PCF11-201ENST00000298281 HOXB6P17509 224 aaKnown RBP12.11□□□□□ -0.47
PCF11-201ENST00000298281 NDST1P52848 882 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 HYIQ5T013 277 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 SLC22A8Q8TCC7 542 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 DNAJA4Q8WW22 397 aaPredicted RBP12.11□□□□□ -0.47
PCF11-201ENST00000298281 BTBD10Q9BSF8 475 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 SLC39A8Q9C0K1 460 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 CCDC59Q9P031 241 aaKnown RBP12.11□□□□□ -0.47
PCF11-201ENST00000298281 TRIM64CA6NLI5 447 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 ERVK-9P63128 1117 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 ABCA11PQ4W5N1 156 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 ZNF470Q6ECI4 717 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 SULT1C3Q6IMI6 304 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 PRICKLE1Q96MT3 831 aaPredicted RBP12.11□□□□□ -0.47
PCF11-201ENST00000298281 TBL1YQ9BQ87 522 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 ERVK-11Q9UQG0 969 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 CAPN6Q9Y6Q1 641 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 MDM4O15151 490 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 CXCL8P10145 99 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 SGCBQ16585 318 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 ZNF433Q8N7K0 673 aaPredicted RBP12.11□□□□□ -0.47
PCF11-201ENST00000298281 BRF2Q9HAW0 419 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 TRMT13Q9NUP7 481 aaKnown RBP12.11□□□□□ -0.47
PCF11-201ENST00000298281 GPATCH2LQ9NWQ4 482 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 KCNIP3Q9Y2W7 256 aa12.11□□□□□ -0.47
PCF11-201ENST00000298281 MRPL42Q9Y6G3 142 aaKnown RBP12.11□□□□□ -0.47
PCF11-201ENST00000298281 ACKR2O00590 384 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 MRASO14807 208 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 AKAP3O75969 853 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 RPL21P46778 160 aaKnown RBP12.1□□□□□ -0.47
PCF11-201ENST00000298281 CDH13P55290 713 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 PER3P56645 1201 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 RRP1BQ14684 758 aaKnown RBP12.1□□□□□ -0.47
PCF11-201ENST00000298281 MAD2L1BPQ15013 274 aaPredicted RBP12.1□□□□□ -0.47
PCF11-201ENST00000298281 ZC3H10Q96K80 434 aaKnown RBP12.1□□□□□ -0.47
PCF11-201ENST00000298281 RIOX1Q9H6W3 641 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 PLGRKTQ9HBL7 147 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 ZNF792Q3KQV3 632 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 NUP50Q9UKX7 468 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 SNCAIPQ9Y6H5 919 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 ECH1Q13011 328 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 SCGB2A2Q13296 93 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 FAM171A1Q5VUB5 890 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 PDCD2LQ9BRP1 358 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 FUT8Q9BYC5 575 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 ABCC13Q9NSE7 274 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 ASTN2O75129 1339 aaPredicted RBP12.1□□□□□ -0.47
PCF11-201ENST00000298281 UBE2Q2LH0YL09 131 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 AKR1A1P14550 325 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 INSRRP14616 1297 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 PGAM2P15259 253 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 EPHX2P34913 555 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 SLC34A1Q06495 639 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 C2orf76Q3KRA6 126 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 EMC1Q8N766 993 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 C1orf216Q8TAB5 229 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 RIOK2Q9BVS4 552 aaKnown RBP12.1□□□□□ -0.47
PCF11-201ENST00000298281 PRDM8Q9NQV8 689 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 CCDC167Q9P0B6 97 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 IKZF3Q9UKT9 509 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.1□□□□□ -0.47
PCF11-201ENST00000298281 CNTRLQ7Z7A1 2325 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 PPP3R1P63098 170 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 SPIRE1Q08AE8 756 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 BROXQ5VW32 411 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 TXNDC11Q6PKC3 985 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 ZNF571Q7Z3V5 609 aaPredicted RBP12.1□□□□□ -0.47
PCF11-201ENST00000298281 NKAPQ8N5F7 415 aaKnown RBP12.1□□□□□ -0.47
PCF11-201ENST00000298281 KAT5Q92993 513 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 HPSEQ9Y251 543 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 ERGIC3Q9Y282 383 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 RIPK2O43353 540 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 FOSL1P15407 271 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 MMP13P45452 471 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 PSEN1P49768 467 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 UGT2B15P54855 530 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 LYPLAL1Q5VWZ2 237 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 EIF1ADQ8N9N8 165 aaKnown RBP12.1□□□□□ -0.47
PCF11-201ENST00000298281 REPS2Q8NFH8 660 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 PCDH19Q8TAB3 1148 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 ACER1Q8TDN7 264 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 RELTQ969Z4 430 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 GNPTGQ9UJJ9 305 aa12.1□□□□□ -0.47
PCF11-201ENST00000298281 NFASCO94856 1347 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 GSC2O15499 205 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 VLDLRP98155 873 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 OGFRL1Q5TC84 451 aaPredicted RBP12.09□□□□□ -0.47
PCF11-201ENST00000298281 PRR23BQ6ZRT6 265 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 HIPK1Q86Z02 1210 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 CHERPQ8IWX8 916 aaKnown RBP12.09□□□□□ -0.47
PCF11-201ENST00000298281 STAG3L4Q8TBR4 150 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 POPDC2Q9HBU9 364 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 EQTNQ9NQ60 294 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 CATSPERZQ9NTU4 200 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms