RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 C1orf127Q8N9H9 656 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 DNAJB14Q8TBM8 379 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 ZNF641Q96N77 438 aaPredicted RBP13.55□□□□□ -0.24
SKA3-201ENST00000298260 CCDC90BQ9GZT6 254 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 ADAMTS10Q9H324 1103 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 PIM2Q9P1W9 311 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 MAP10Q9P2G4 905 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 FEM1BQ9UK73 627 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 VANGL2Q9ULK5 521 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 NUP205Q92621 2012 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 CABYRO75952 493 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 RASAL1O95294 804 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 MPOP05164 745 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 YBX3P16989 372 aaKnown RBP eCLIP13.54□□□□□ -0.246e-7■■■□□ 18.1
SKA3-201ENST00000298260 IL10P22301 178 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 PSMA4P25789 261 aaKnown RBP13.54□□□□□ -0.24
SKA3-201ENST00000298260 CD68P34810 354 aaPredicted RBP13.54□□□□□ -0.24
SKA3-201ENST00000298260 NDST1P52848 882 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 BCAT1P54687 386 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 PITX1P78337 314 aaPredicted RBP13.54□□□□□ -0.24
SKA3-201ENST00000298260 OCA2Q04671 838 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 GRSF1Q12849 480 aaKnown RBP eCLIP13.54□□□□□ -0.24
SKA3-201ENST00000298260 AGAP7PQ5VUJ5 663 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 DNERQ8NFT8 737 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 STYXQ8WUJ0 223 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 CENPNQ96H22 339 aaPredicted RBP13.54□□□□□ -0.24
SKA3-201ENST00000298260 ZNF670Q9BS34 389 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 C9orf16Q9BUW7 83 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 IL22Q9GZX6 179 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 RNF38Q9H0F5 515 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 PRDM12Q9H4Q4 367 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 VTI1BQ9UEU0 232 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 B3GNT3Q9Y2A9 372 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 LTBP1Q14766 1721 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 DYTNA2CJ06 578 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 ARPC2O15144 300 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 CPNE6O95741 557 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 HTR1AP08908 422 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 NAMPTP43490 491 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 PSMD8P48556 350 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 ZNF846Q147U1 533 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 MEP1AQ16819 746 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 DPY19L1Q2PZI1 675 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 CCNYL2Q5T2Q4 361 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 PPP2R2DQ66LE6 453 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 ZNF773Q6PK81 442 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 ANKRD52Q8NB46 1076 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 PSMA8Q8TAA3 256 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 TRIT1Q9H3H1 467 aaKnown RBP13.54□□□□□ -0.24
SKA3-201ENST00000298260 AKIP1Q9NQ31 210 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 CHST12Q9NRB3 414 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 ABCB10Q9NRK6 738 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 CMTM6Q9NX76 183 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 ANKMY1Q9P2S6 941 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 PNMA8BQ9ULN7 279 aaPredicted RBP13.54□□□□□ -0.24
SKA3-201ENST00000298260 CTDP1Q9Y5B0 961 aaPredicted RBP13.54□□□□□ -0.24
SKA3-201ENST00000298260 GJA3Q9Y6H8 435 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 PSME4Q14997 1843 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 KIAA1217Q5T5P2 1943 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 PPP6CO00743 305 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 CILPO75339 1184 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 TNNC2P02585 160 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 ALDOCP09972 364 aaKnown RBP13.54□□□□□ -0.24
SKA3-201ENST00000298260 HSPA8P11142 646 aaKnown RBP13.54□□□□□ -0.24
SKA3-201ENST00000298260 CASP2P42575 452 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 ENPEPQ07075 957 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 KIF19Q2TAC6 998 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 FAM160B2Q86V87 743 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 HS3ST5Q8IZT8 346 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 SLC7A14Q8TBB6 771 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 RAB2BQ8WUD1 216 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 FKBP10Q96AY3 582 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 ITCHQ96J02 903 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 MAELQ96JY0 434 aaKnown RBP13.54□□□□□ -0.24
SKA3-201ENST00000298260 TMEM74Q96NL1 305 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 SEPT3Q9UH03 358 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 DSEQ9UL01 958 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 RAD54BQ9Y620 910 aa13.54□□□□□ -0.24
SKA3-201ENST00000298260 NOTOA8MTQ0 251 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 SLC22A2O15244 555 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 MSCO60682 206 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 AHSGP02765 367 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 VBP1P61758 197 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 IFRD2Q12894 506 aaPredicted RBP13.53□□□□□ -0.24
SKA3-201ENST00000298260 ZBTB17Q13105 803 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 GOLGA7BQ2TAP0 167 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 DALRD3Q5D0E6 543 aaKnown RBP13.53□□□□□ -0.24
SKA3-201ENST00000298260 PPP1R26Q5T8A7 1209 aaPredicted RBP13.53□□□□□ -0.24
SKA3-201ENST00000298260 CYHR1Q6ZMK1 362 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 KDELC2Q7Z4H8 507 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 SPARTQ8N0X7 666 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 ZCCHC7Q8N3Z6 543 aaKnown RBP13.53□□□□□ -0.24
SKA3-201ENST00000298260 SLC22A17Q8WUG5 538 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 ELMO1Q92556 727 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 ISL2Q96A47 359 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 PSD2Q9BQI7 771 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 KLHL8Q9P2G9 620 aaPredicted RBP13.53□□□□□ -0.24
SKA3-201ENST00000298260 LRRC37AA6NMS7 1700 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 TARM1B6A8C7 271 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 NADKO95544 446 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms