RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 VAPBO95292 243 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 TYMPP19971 482 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 EN1Q05925 392 aaPredicted RBP9.9□□□□□ -0.82
COL6A3-201ENST00000295550 SCRN3Q0VDG4 424 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 RALGDSQ12967 914 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 KCNT2Q6UVM3 1135 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 BTBD9Q96Q07 612 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 CCNB1IP1Q9NPC3 277 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 NKRFO15226 690 aaKnown RBP eCLIP9.9□□□□□ -0.82
COL6A3-201ENST00000295550 JCHAINP01591 159 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 PIWIL2Q8TC59 973 aaKnown RBP9.9□□□□□ -0.82
COL6A3-201ENST00000295550 CARD8Q9Y2G2 431 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 SPTBP11277 2137 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 S100A2P29034 98 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 PCBP1Q15365 356 aaKnown RBP eCLIP9.9□□□□□ -0.82
COL6A3-201ENST00000295550 INTS11Q5TA45 600 aaKnown RBP9.9□□□□□ -0.82
COL6A3-201ENST00000295550 ANKRD13AQ8IZ07 590 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF655Q8N720 491 aaPredicted RBP9.9□□□□□ -0.82
COL6A3-201ENST00000295550 VPS51Q9UID3 782 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 GNPTGQ9UJJ9 305 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 KCNH4Q9UQ05 1017 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 SAMHD1Q9Y3Z3 626 aaKnown RBP9.9□□□□□ -0.82
COL6A3-201ENST00000295550 A0A0B4J269 797 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 TCRBV9S1A1TA0A576 114 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 BTN3A1O00481 513 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 EDF1O60869 148 aaKnown RBP9.9□□□□□ -0.82
COL6A3-201ENST00000295550 ZMPSTE24O75844 475 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 OR6A2O95222 327 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 PIK3CGP48736 1102 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 COPZ1P61923 177 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 MIB1Q86YT6 1006 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 AADATQ8N5Z0 425 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 ASB2Q96Q27 587 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 PNPLA8Q9NP80 782 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 STXBP5LQ9Y2K9 1186 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 E5RJQ4 531 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 FADS2O95864 444 aaKnown RBP9.9□□□□□ -0.82
COL6A3-201ENST00000295550 BOP1Q14137 746 aaKnown RBP9.9□□□□□ -0.82
COL6A3-201ENST00000295550 PRAMEF18Q5VWM3 479 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 SMARCD1Q96GM5 515 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 PCDHB18PQ96TA0 734 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 SMCO3A2RU48 225 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 GCLCP48506 637 aaPredicted RBP9.9□□□□□ -0.83
COL6A3-201ENST00000295550 POLD2P49005 469 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 TAS2R40P59535 323 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 XIAPP98170 497 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 SPIBQ01892 262 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 HLA-DQA1Q5Y7H0 255 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 OR2L5Q8NG80 312 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 OR8H1Q8NGG4 311 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 METTL6Q8TCB7 284 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 TSPAN18Q96SJ8 248 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 GSAPA4D1B5 854 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 RBMXL2O75526 392 aaKnown RBP9.9□□□□□ -0.83
COL6A3-201ENST00000295550 UGCGQ16739 394 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 SPESP1Q6UW49 350 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 SCUBE3Q8IX30 993 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 KREMEN1Q96MU8 473 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 ADAMTSL3P82987 1691 aa9.9□□□□□ -0.83
COL6A3-201ENST00000295550 TKTL1P51854 596 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ARF3P61204 181 aaPredicted RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ARF1P84077 181 aaKnown RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 EFEMP1Q12805 493 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 CBX3Q13185 183 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ZACNQ401N2 412 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 GALNT18Q6P9A2 607 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ZC3H7AQ8IWR0 971 aaKnown RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 GFM1Q96RP9 751 aaKnown RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 PCDHGA10Q9Y5H3 936 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 SH3BGRLO75368 114 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ARFIP1P53367 373 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 PTPN5P54829 565 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 UGT2B15P54855 530 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 GLB1LQ6UWU2 654 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 SPAG16Q8N0X2 631 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 IL31RAQ8NI17 732 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 RSPH9Q9H1X1 276 aaPredicted RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 SIX2Q9NPC8 291 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 EMC3Q9P0I2 261 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 PLA2G4CQ9UP65 541 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ANGPT4Q9Y264 503 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 SVILO95425 2214 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 DCDC2CA8MYV0 355 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 WNT10BO00744 389 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 IFI30P13284 250 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 FAM183BPQ6ZVS7 135 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 MILR1Q7Z6M3 343 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 TTYH1Q9H313 450 aaPredicted RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 TRIT1Q9H3H1 467 aaKnown RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 VPS45Q9NRW7 570 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 PIH1D1Q9NWS0 290 aaKnown RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 CBX4O00257 560 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ZNF432O94892 652 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ZSCAN5DPP0CG00 497 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 SCNN1BP51168 640 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 CCNHP51946 323 aaPredicted RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 SMIM11AP58511 58 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 EHD1Q9H4M9 534 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 CATSPERZQ9NTU4 200 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 TAS2R13Q9NYV9 303 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms