RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ALLCQ8N6M5 410 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 ZNF611Q8N823 705 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 ACAT2Q9BWD1 397 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 RNF208Q9H0X6 261 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 PCDH9Q9HC56 1237 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 XPNPEP3Q9NQH7 507 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 MED31Q9Y3C7 131 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 PCDHGC5Q9Y5F6 944 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 CPSF4LA6NMK7 179 aaKnown RBP11.41□□□□□ -0.58
PTPN4-201ENST00000263708 OR1I1O60431 355 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 PGAM2P15259 253 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 CHST15Q7LFX5 561 aaPredicted RBP11.41□□□□□ -0.58
PTPN4-201ENST00000263708 CLHC1Q8NHS4 586 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 CEP295NLQ96MC4 621 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 GNEQ9Y223 722 aaKnown RBP11.41□□□□□ -0.58
PTPN4-201ENST00000263708 CEP170Q5SW79 1584 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 DNTTP04053 509 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 PCCBP05166 539 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 CYP11B2P19099 503 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 PDCD4Q53EL6 469 aaKnown RBP11.41□□□□□ -0.58
PTPN4-201ENST00000263708 STXBP5Q5T5C0 1151 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 SCIMPQ6UWF3 145 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 SPERTQ8NA61 448 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 STAG3L4Q8TBR4 150 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 ACTL9Q8TC94 416 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 FBXO6Q9NRD1 293 aaPredicted RBP11.41□□□□□ -0.58
PTPN4-201ENST00000263708 ZNF224Q9NZL3 707 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 RIPK2O43353 540 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 HCN1O60741 890 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 MLYCDO95822 493 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 ELFN1P0C7U0 828 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 HGFP14210 728 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 ABCG1P45844 678 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 RPL14P50914 215 aaKnown RBP11.41□□□□□ -0.58
PTPN4-201ENST00000263708 TSPAN5P62079 268 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 BICRALQ6AI39 1079 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 MARCH7Q9H992 704 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 ASF1AQ9Y294 204 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 CTPS1P17812 591 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 RPS12P25398 132 aaKnown RBP11.41□□□□□ -0.58
PTPN4-201ENST00000263708 GXYLT1Q4G148 440 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 SLC25A25Q6KCM7 469 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 BRSK1Q8TDC3 778 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 COPS7AQ9UBW8 275 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 PEX11AO75192 247 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 SLC25A14O95258 325 aaPredicted RBP11.41□□□□□ -0.58
PTPN4-201ENST00000263708 TTPAP49638 278 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 OGFRL1Q5TC84 451 aaPredicted RBP11.41□□□□□ -0.58
PTPN4-201ENST00000263708 GALNT5Q7Z7M9 940 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 C1GALT1C1Q96EU7 318 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 TMPRSS4Q9NRS4 437 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 CNOT6Q9ULM6 557 aaKnown RBP11.41□□□□□ -0.58
PTPN4-201ENST00000263708 H3BRB1 525 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 PDE2AO00408 941 aaPredicted RBP11.41□□□□□ -0.58
PTPN4-201ENST00000263708 KCNQ2O43526 872 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 FADS2O95864 444 aaKnown RBP11.41□□□□□ -0.58
PTPN4-201ENST00000263708 PSEN2P49810 448 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 IST1P53990 364 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 RGS8P57771 180 aaPredicted RBP11.41□□□□□ -0.58
PTPN4-201ENST00000263708 CRADDP78560 199 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 PABPC1LQ4VXU2 614 aaKnown RBP11.41□□□□□ -0.58
PTPN4-201ENST00000263708 TTC27Q6P3X3 843 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 CCDC80Q76M96 950 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 TMC8Q8IU68 726 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 TOP1MTQ969P6 601 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 ITSN1Q15811 1721 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 HMGCRP04035 888 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 SRCP12931 536 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 ERVK-9P63128 1117 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 C16orf46Q6P387 395 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 LMLNQ96KR4 655 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 ERVK-11Q9UQG0 969 aa11.41□□□□□ -0.58
PTPN4-201ENST00000263708 SUV39H1O43463 412 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 BUD23O43709 281 aaKnown RBP11.4□□□□□ -0.58
PTPN4-201ENST00000263708 CAMTA2O94983 1202 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 ILF2Q12905 390 aaKnown RBP11.4□□□□□ -0.58
PTPN4-201ENST00000263708 HHIPL2Q6UWX4 724 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 ZNF557Q8N988 423 aaPredicted RBP11.4□□□□□ -0.58
PTPN4-201ENST00000263708 PPCDCQ96CD2 204 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 ZDHHC15Q96MV8 337 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 OR52E6Q96RD3 313 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 OSGEPQ9NPF4 335 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 SEMA3GQ9NS98 782 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 AP2A2O94973 939 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 RIN1Q13671 783 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 AP2M1Q96CW1 435 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 GAL3ST1Q99999 423 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 PIGNO95427 931 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 HPS1Q92902 700 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 CRAMP1Q96RY5 1269 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 ZNF184Q99676 751 aaPredicted RBP11.4□□□□□ -0.58
PTPN4-201ENST00000263708 MYH6P13533 1939 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 IRGMA1A4Y4 181 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 LTA4HP09960 611 aaKnown RBP11.4□□□□□ -0.58
PTPN4-201ENST00000263708 PAPD7Q5XG87 772 aaKnown RBP11.4□□□□□ -0.58
PTPN4-201ENST00000263708 ZNF567Q8N184 647 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 ZNF548Q8NEK5 533 aaPredicted RBP11.4□□□□□ -0.58
PTPN4-201ENST00000263708 AARSD1Q9BTE6 412 aaKnown RBP11.4□□□□□ -0.58
PTPN4-201ENST00000263708 ABCC13Q9NSE7 274 aa11.4□□□□□ -0.58
PTPN4-201ENST00000263708 ZNF639Q9UID6 485 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms