RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 PNPLA3Q9NST1 481 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 BTRCQ9Y297 605 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 LRRIQ1Q96JM4 1722 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 CHURC1-FNTBB4DL54 471 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 B4GALT5O43286 388 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 KRT36O76013 467 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 PGK1P00558 417 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 HTR1BP28222 390 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 XIAPP98170 497 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 NOMO1Q15155 1222 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 TAF13Q15543 124 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 CPSF6Q16630 551 aaKnown RBP eCLIP13.61□□□□□ -0.23
SF3A1-201ENST00000215793 TSHZ1Q6ZSZ6 1077 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 ARHGAP22Q7Z5H3 698 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 SPPL2BQ8TCT7 592 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 CORO1BQ9BR76 489 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 SLC4A5Q9BY07 1137 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 RFXANKO14593 260 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 BANF1O75531 89 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 GCATO75600 419 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 CST1P01037 141 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 COL6A2P12110 1019 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 ARF4P18085 180 aaPredicted RBP13.61□□□□□ -0.23
SF3A1-201ENST00000215793 MAXP61244 160 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 GPR142Q7Z601 462 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 TIFAQ96CG3 184 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 MCCC1Q96RQ3 725 aaPredicted RBP13.61□□□□□ -0.23
SF3A1-201ENST00000215793 CDH19Q9H159 772 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 GLOD4Q9HC38 313 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 PCDH12Q9NPG4 1184 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 FAM105AQ9NUU6 356 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 PCDHB9Q9Y5E1 797 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 COL1A2P08123 1366 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 BBIP1A8MTZ0 92 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 IFNA16P05015 189 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 ADRA1BP35368 520 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 TUSC3Q13454 348 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 PSMD5Q16401 504 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 AP5B1Q2VPB7 878 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 ZIK1Q3SY52 487 aaPredicted RBP13.61□□□□□ -0.23
SF3A1-201ENST00000215793 LCLAT1Q6UWP7 414 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 FAM220AQ7Z4H9 259 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 KBTBD2Q8IY47 623 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 RTL3Q8N8U3 475 aaKnown RBP13.61□□□□□ -0.23
SF3A1-201ENST00000215793 ZNF540Q8NDQ6 660 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 LINGO1Q96FE5 620 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 ZNF510Q9Y2H8 683 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 DEPDC5O75140 1603 aa13.61□□□□□ -0.23
SF3A1-201ENST00000215793 ACSL4O60488 711 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 HLA-DQA2P01906 255 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 ASGR1P07306 291 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 PRG2P13727 222 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 HNRNPLP14866 589 aaKnown RBP eCLIP13.6□□□□□ -0.23
SF3A1-201ENST00000215793 C10orf107Q8IVU9 208 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 WDR60Q8WVS4 1066 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 POLR1BQ9H9Y6 1135 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 CMTM6Q9NX76 183 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 SAMHD1Q9Y3Z3 626 aaKnown RBP13.6□□□□□ -0.23
SF3A1-201ENST00000215793 CAPN1P07384 714 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 BPGMP07738 259 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 SLC35G4P0C7Q5 338 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 PIRTP0C851 137 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 UBAP2LQ14157 1087 aaKnown RBP13.6□□□□□ -0.23
SF3A1-201ENST00000215793 ALG11Q2TAA5 492 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 TATDN1Q6P1N9 297 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 PEG10Q86TG7 708 aaKnown RBP13.6□□□□□ -0.23
SF3A1-201ENST00000215793 PROSER1Q86XN7 944 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 RASAL3Q86YV0 1011 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 RASGEF1CQ8N431 466 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 CLP1Q92989 425 aaKnown RBP13.6□□□□□ -0.23
SF3A1-201ENST00000215793 ZNF607Q96SK3 696 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 HOPXQ9BPY8 73 aaPredicted RBP13.6□□□□□ -0.23
SF3A1-201ENST00000215793 BRD9Q9H8M2 597 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 OR10H1Q9Y4A9 318 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 MFHAS1Q9Y4C4 1052 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 TRAF6Q9Y4K3 522 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 ATP6AP2A0A1C7CYW4 349 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 AP3D1O14617 1153 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 ATP6AP2O75787 350 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 TGDSO95455 350 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 TPSB2P20231 275 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 CD52P31358 61 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 UGT2B15P54855 530 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 ITGADQ13349 1161 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 GRM3Q14832 879 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 TPSAB1Q15661 275 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 RGS21Q2M5E4 152 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 CNSTQ6PJW8 725 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 TMEM199Q8N511 208 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 DNAJC1Q96KC8 554 aaKnown RBP13.6□□□□□ -0.23
SF3A1-201ENST00000215793 MGRN1O60291 552 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 CLDN11O75508 207 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 SLC22A3O75751 556 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 SEC24AO95486 1093 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 FGRP09769 529 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 CLK3P49761 638 aaKnown RBP13.6□□□□□ -0.23
SF3A1-201ENST00000215793 GPAT3Q53EU6 434 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 TEX44Q53QW1 395 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 ARSHQ5FYA8 562 aa13.6□□□□□ -0.23
SF3A1-201ENST00000215793 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms