RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 FNDC1Q4ZHG4 1894 aaPredicted RBP10.75□□□□□ -0.69
USP28-201ENST00000003302 UBXN8O00124 270 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 ENPP3O14638 875 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 HMBSP08397 361 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 MYL4P12829 197 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 GRK4P32298 578 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 WNT3AP56704 352 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 OR4D1Q15615 310 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 EGFL6Q8IUX8 553 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 HDAC10Q969S8 669 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 PABPC5Q96DU9 382 aaKnown RBP10.75□□□□□ -0.69
USP28-201ENST00000003302 NT5MQ9NPB1 228 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 NOD1Q9Y239 953 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 CCL15-CCL14A0A0B4J2E2 113 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 NCF1BA6NI72 391 aaPredicted RBP10.74□□□□□ -0.69
USP28-201ENST00000003302 NCF1CA8MVU1 366 aaPredicted RBP10.74□□□□□ -0.69
USP28-201ENST00000003302 KIF3CO14782 793 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 SUPT7LO94864 414 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 NCF1P14598 390 aaPredicted RBP10.74□□□□□ -0.69
USP28-201ENST00000003302 AGTR2P50052 363 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 PRKAA1Q13131 559 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 EIF4EBP2Q13542 120 aaPredicted RBP10.74□□□□□ -0.69
USP28-201ENST00000003302 FASTKQ14296 549 aaKnown RBP10.74□□□□□ -0.69
USP28-201ENST00000003302 CCL15Q16663 113 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 DDR2Q16832 855 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 C4orf22Q6V702 233 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 ISCA2Q86U28 154 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 PSMG2Q969U7 264 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 TBATAQ96M53 351 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 ACOX2Q99424 681 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 DCUN1D5Q9BTE7 237 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 UTS2RQ9UKP6 389 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 CNOT6Q9ULM6 557 aaKnown RBP10.74□□□□□ -0.69
USP28-201ENST00000003302 TCAF1Q9Y4C2 921 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 HS3ST4Q9Y661 456 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 TMEM114B3SHH9 223 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 CHRNA1P02708 482 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 C1QCP02747 245 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 HOXD8P13378 290 aaPredicted RBP10.74□□□□□ -0.69
USP28-201ENST00000003302 SV2CQ496J9 727 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 NEPROQ6NW34 567 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 CXCL17Q6UXB2 119 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 ZNF225Q9UK10 706 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 GALNT3Q14435 633 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 TBPL2Q6SJ96 375 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 ARHGAP22Q7Z5H3 698 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 FAM47BQ8NA70 645 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 OR6P1Q8NGX9 317 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 HIC2Q96JB3 615 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 MRPL46Q9H2W6 279 aaKnown RBP10.74□□□□□ -0.69
USP28-201ENST00000003302 AKTIPQ9H8T0 292 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 SP110Q9HB58 689 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 ADAM28Q9UKQ2 775 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 DERAQ9Y315 318 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 NLRC5Q86WI3 1866 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 PTPRDP23468 1912 aa10.74□□□□□ -0.69
USP28-201ENST00000003302 ASPDHA6ND91 283 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 MTHFD2P13995 350 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 GGT5P36269 586 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 CAP1Q01518 475 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 C18orf21Q32NC0 220 aaPredicted RBP10.73□□□□□ -0.69
USP28-201ENST00000003302 METTL21CQ5VZV1 264 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 C2CD4AQ8NCU7 369 aaPredicted RBP10.73□□□□□ -0.69
USP28-201ENST00000003302 NTAN1Q96AB6 310 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 HMCESQ96FZ2 354 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 ZNF560Q96MR9 790 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 CDK15Q96Q40 435 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 SIKE1Q9BRV8 207 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 SMOXQ9NWM0 555 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 GALNT8Q9NY28 637 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 CD300AQ9UGN4 299 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 WDR87Q6ZQQ6 2873 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 AP1G1O43747 822 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 CACNG3O60359 315 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 CD4P01730 458 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 LINC00032P0C843 101 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 ITKQ08881 620 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 TRIM25Q14258 630 aaKnown RBP10.73□□□□□ -0.69
USP28-201ENST00000003302 C6orf203Q9P0P8 240 aaPredicted RBP10.73□□□□□ -0.69
USP28-201ENST00000003302 AURKCQ9UQB9 309 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 MED16Q9Y2X0 877 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 AP4S1Q9Y587 144 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 MYO7AQ13402 2215 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 PSMD12O00232 456 aaPredicted RBP10.73□□□□□ -0.69
USP28-201ENST00000003302 CTGFP29279 349 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 ACVRL1P37023 503 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 SCNN1AP37088 669 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 SLC5A3P53794 718 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 FAM83EQ2M2I3 478 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 SETMARQ53H47 684 aaPredicted RBP10.73□□□□□ -0.69
USP28-201ENST00000003302 ATPAF2Q8N5M1 289 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 CEP70Q8NHQ1 597 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 SNRNP27Q8WVK2 155 aaKnown RBP10.73□□□□□ -0.69
USP28-201ENST00000003302 IGSF8Q969P0 613 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 TMEM79Q9BSE2 394 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 FSD1LQ9BXM9 530 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 EFCAB1Q9HAE3 211 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 FAM105AQ9NUU6 356 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 IRAK4Q9NWZ3 460 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 NR5A2O00482 541 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms