RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 GPX6P59796 221 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 CCDC157Q569K6 752 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 GNASQ5JWF2 1037 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 UBAP2Q5T6F2 1119 aaKnown RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 FAM160B1Q5W0V3 765 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 CIAPIN1Q6FI81 312 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 RETSATQ6NUM9 610 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 BRAT1Q6PJG6 821 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 LYPD8Q6UX82 237 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 PTAR1Q7Z6K3 402 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 LNX2Q8N448 690 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 TAB3Q8N5C8 712 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 BANPQ8N9N5 519 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 DAGLBQ8NCG7 672 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 C3orf58Q8NDZ4 430 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 OR6Q1Q8NGQ2 317 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 ETNPPLQ8TBG4 499 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 SLC5A11Q8WWX8 675 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 FEM1CQ96JP0 617 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 BCL7BQ9BQE9 202 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 TEX12Q9BXU0 123 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 PRMT8Q9NR22 394 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 SNX15Q9NRS6 342 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 USE1Q9NZ43 259 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 SNX6Q9UNH7 406 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 ATP8B3O60423 1300 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 CLUHO75153 1309 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 PP2D1A8MPX8 630 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 TMX2-CTNND1H3BSU7 103 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 ZBTB39O15060 712 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 ATG13O75143 517 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 TIPRLO75663 272 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 OGNP20774 298 aaKnown RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 CYP3A5P20815 502 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 ALDH4A1P30038 563 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 CTNNB1P35222 781 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 TECP42680 631 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 ATXN1P54253 815 aaKnown RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 HADHBP55084 474 aaKnown RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 SNRPD2P62316 118 aaKnown RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 MAB21L1Q13394 359 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 MTM1Q13496 603 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 DGCR6Q14129 220 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 SKIV2LQ15477 1246 aaKnown RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 NTRK3Q16288 839 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 CALCRLQ16602 461 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 TTC23Q5W5X9 447 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 PM20D1Q6GTS8 502 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 PLET1Q6UQ28 207 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 METTL4Q8N3J2 472 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 RHOXF1Q8NHV9 184 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 ELMO1Q92556 727 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 MARC2Q969Z3 335 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 MMP27Q9H306 513 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 ADAMTS10Q9H324 1103 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 KANSL2Q9H9L4 492 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 CYP3A43Q9HB55 503 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 DYRK4Q9NR20 520 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 PLSCR3Q9NRY6 295 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 KANSL3Q9P2N6 904 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 POLG2Q9UHN1 485 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 VAV3Q9UKW4 847 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 PRR12Q9ULL5 1215 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 FARP1Q9Y4F1 1045 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF99A8MXY4 864 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 LRRN2O75325 713 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 COL3A1P02461 1466 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 NFICP08651 508 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 BMP4P12644 408 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 JUPP14923 745 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 CKMT2P17540 419 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 S100PP25815 95 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 CDH5P33151 784 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 MEOX2P50222 304 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 TEKQ02763 1124 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 CHAF1BQ13112 559 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 CYP1B1Q16678 543 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF404Q494X3 552 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 BRMS1LQ5PSV4 323 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 AGMOQ6ZNB7 445 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 CCDC36Q8IYA8 594 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 LRRC17Q8N6Y2 441 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 KCT2Q8NC54 265 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 GANCQ8TET4 914 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 ADGRA2Q96PE1 1338 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 PFDN5Q99471 154 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 DOK1Q99704 481 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 MIR1-1HGQ9H1L0 117 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 C12orf65Q9H3J6 166 aaKnown RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 XPNPEP1Q9NQW7 623 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SETD4Q9NVD3 440 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 NSMCE4AQ9NXX6 385 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 IL37Q9NZH6 218 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 UBQLN2Q9UHD9 624 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 PNMA8BQ9ULN7 279 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 PCDHGB4Q9UN71 923 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 PCDHGB5Q9Y5G0 923 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 A0A1B0GTW7 788 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 PTP4A3O75365 173 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms