RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SEMA4CQ9C0C4 833 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 DHX35Q9H5Z1 703 aaKnown RBP16.28■□□□□ 0.2
CLN3-246ENST00000636228 PCSK1NQ9UHG2 260 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 GPR34Q9UPC5 381 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 PTPRQQ9UMZ3 2332 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 TSPAN11A1L157 253 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 TMEM110-MUSTN1A8MSY1 372 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 A8MX80 341 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 ERVH48-1M5A8F1 160 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 NTN3O00634 580 aaPredicted RBP16.27■□□□□ 0.2
CLN3-246ENST00000636228 TOR1BO14657 336 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 FGF10O15520 208 aaPredicted RBP16.27■□□□□ 0.2
CLN3-246ENST00000636228 ATMINO43313 823 aaPredicted RBP16.27■□□□□ 0.2
CLN3-246ENST00000636228 PRAMEF11O60813 436 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 RASGRP1O95267 797 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 KRT10P13645 584 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 PLA2G2AP14555 144 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 CDK11BP21127 795 aaKnown RBP16.27■□□□□ 0.2
CLN3-246ENST00000636228 PEX5P50542 639 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 BLKP51451 505 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 UCNP55089 124 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 VAC14Q08AM6 782 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 LY6DQ14210 128 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 NFATC4Q14934 902 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 ELOCQ15369 112 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 CFAP58Q5T655 872 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 ERAP2Q6P179 960 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 IGF2-ASQ6U949 168 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 ARHGAP36Q6ZRI8 547 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 APTXQ7Z2E3 356 aaKnown RBP16.27■□□□□ 0.2
CLN3-246ENST00000636228 SRLQ86TD4 932 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 SFTPA2Q8IWL1 248 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 SDR16C5Q8N3Y7 309 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 FSTL5Q8N475 847 aaPredicted RBP16.27■□□□□ 0.2
CLN3-246ENST00000636228 WDR36Q8NI36 951 aaKnown RBP16.27■□□□□ 0.2
CLN3-246ENST00000636228 SCG3Q8WXD2 468 aaKnown RBP16.27■□□□□ 0.2
CLN3-246ENST00000636228 GRAMD1AQ96CP6 724 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 PDXPQ96GD0 296 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 FOXP3Q9BZS1 431 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 EPB41L5Q9HCM4 733 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 KLQ9UEF7 1012 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 AP4E1Q9UPM8 1137 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 PCDHGA8Q9Y5G5 932 aa16.27■□□□□ 0.2
CLN3-246ENST00000636228 SHROOM3Q8TF72 1996 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 TTC24A2A3L6 582 aaPredicted RBP16.26■□□□□ 0.19
CLN3-246ENST00000636228 CDRT15L2A8MXV6 281 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 ALPIP09923 528 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 HGFP14210 728 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 PSMA2P25787 234 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 HTR1BP28222 390 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 MMP12P39900 470 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 SUOXP51687 545 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 AIF1P55008 147 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 SKOR1P84550 965 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 MYL5Q02045 173 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 RHDQ02161 417 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 ZSCAN23Q3MJ62 389 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 KIAA1614Q5VZ46 1190 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 SASS6Q6UVJ0 657 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 RBM43Q6ZSC3 357 aaKnown RBP16.26■□□□□ 0.19
CLN3-246ENST00000636228 IRF2BP2Q7Z5L9 587 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 TP53INP2Q8IXH6 220 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 ARL14Q8N4G2 192 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 ARFGAP1Q8N6T3 406 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 Q8N9G6 341 aaPredicted RBP16.26■□□□□ 0.19
CLN3-246ENST00000636228 ANKRD20A12PQ8NF67 263 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 HCAR2Q8TDS4 363 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 FUBP1Q96AE4 644 aaKnown RBP16.26■□□□□ 0.19
CLN3-246ENST00000636228 NSMCE3Q96MG7 304 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 ZNF641Q96N77 438 aaPredicted RBP16.26■□□□□ 0.19
CLN3-246ENST00000636228 GFM1Q96RP9 751 aaKnown RBP16.26■□□□□ 0.19
CLN3-246ENST00000636228 ERGIC2Q96RQ1 377 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 PEBP4Q96S96 227 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 KCTD15Q96SI1 283 aaPredicted RBP16.26■□□□□ 0.19
CLN3-246ENST00000636228 TRIM7Q9C029 511 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 MRPL40Q9NQ50 206 aaKnown RBP16.26■□□□□ 0.19
CLN3-246ENST00000636228 ATP8A1Q9Y2Q0 1164 aa16.26■□□□□ 0.19
CLN3-246ENST00000636228 CCDC187A0A096LP49 1063 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 A0A1W2PQM1 296 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 TMEM202A6NGA9 273 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 LRRC10BA6NIK2 292 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 DFFAO00273 331 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 EEF2KO00418 725 aaKnown RBP16.25■□□□□ 0.19
CLN3-246ENST00000636228 DAPK3O43293 454 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 PALMO75781 387 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 RECQL5O94762 991 aaPredicted RBP16.25■□□□□ 0.19
CLN3-246ENST00000636228 TNFP01375 233 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 RPLP0P05388 317 aaKnown RBP16.25■□□□□ 0.19
CLN3-246ENST00000636228 ATP1A3P13637 1013 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 TNFAIP3P21580 790 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 NDST2P52849 883 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 CLN3Q13286 438 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 MAMLD1Q13495 774 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 NCAPHQ15003 741 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 BRAT1Q6PJG6 821 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 GKN2Q86XP6 184 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 ARHGAP12Q8IWW6 846 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 PELI3Q8N2H9 469 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 OR1E3Q8WZA6 343 aa16.25■□□□□ 0.19
CLN3-246ENST00000636228 WDR92Q96MX6 357 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms