RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 CCDC89Q8N998 374 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 SPATA22Q8NHS9 363 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 SNX19Q92543 992 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 MAGOHBQ96A72 148 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 RTP4Q96DX8 246 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 IFT43Q96FT9 208 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 FEM1CQ96JP0 617 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 ADGRE3Q9BY15 652 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 PCDH12Q9NPG4 1184 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 RNF14Q9UBS8 474 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 RPL26L1Q9UNX3 145 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 CHKBQ9Y259 395 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 GOLGA6CA6NDK9 693 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 GOLGA6BA6NDN3 693 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 AREL1O15033 823 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 FANCGO15287 622 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 RNGTTO60942 597 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 PMPCBO75439 489 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 LMNAP02545 664 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 GOLGA6DP0CG33 693 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 DPP6P42658 865 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 PTGER3P43115 390 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 GEMP55040 296 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 GDF10P55107 478 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 FAM193AP78312 1265 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 LMNB2Q03252 620 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 MPP3Q13368 585 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 PCSK7Q16549 785 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 KIAA1161Q6NSJ0 714 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 CCDC70Q6NSX1 233 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 USP45Q70EL2 814 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 CYP2U1Q7Z449 544 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 TRIM69Q86WT6 500 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 HORMAD1Q86X24 394 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 SLC41A1Q8IVJ1 513 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 RGL4Q8IZJ4 473 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 SUMF1Q8NBK3 374 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 LPCAT1Q8NF37 534 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 CXorf40AQ8TE69 158 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 LRRC45Q96CN5 670 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 GOLGA6AQ9NYA3 693 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 UBP1Q9NZI7 540 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 GMEB2Q9UKD1 530 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 ITM2BQ9Y287 266 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 GPR179Q6PRD1 2367 aa19.23■□□□□ 0.67
SQSTM1-216ENST00000626660 RALGAPA1Q6GYQ0 2036 aa19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 USP34Q70CQ2 3546 aa19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 A0A1W2PQU0 124 aa19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 RIOK3O14730 519 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 FZD6O60353 706 aa19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 MT-CYBP00156 380 aaPredicted RBP19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 CYP2A6P11509 494 aaPredicted RBP19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 PSMB4P28070 264 aa19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 NUDT1P36639 197 aa19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 RPS21P63220 83 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 CDK18Q07002 472 aa19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 IHHQ14623 411 aa19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 PARP6Q2NL67 630 aa19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 CREG2Q8IUH2 290 aa19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 C12orf50Q8NA57 414 aaPredicted RBP19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 TADA1Q96BN2 335 aa19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 BIRC7Q96CA5 298 aa19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 AAR2Q9Y312 384 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-216ENST00000626660 TNRC6BQ9UPQ9 1833 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 PROB1E7EW31 1015 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 SPINT1O43278 529 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 PHF2O75151 1096 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 EPN2O95208 641 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 PRKCGP05129 697 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 PDHA1P08559 390 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 MMP12P39900 470 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 KCNJ1P48048 391 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 WNT3AP56704 352 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 PPP2CBP62714 309 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 PPP2CAP67775 309 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 CREB5Q02930 508 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 CYP1B1Q16678 543 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 TMEM52BQ4KMG9 183 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 SETMARQ53H47 684 aaPredicted RBP19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 DPPA4Q7L190 304 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 KDELC2Q7Z4H8 507 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 ATL2Q8NHH9 583 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 PIH1D2Q8WWB5 315 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 RMDN1Q96DB5 314 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 OXNAD1Q96HP4 312 aaPredicted RBP19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 FSD1LQ9BXM9 530 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 FEZ2Q9UHY8 353 aaPredicted RBP19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 GGT7Q9UJ14 662 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 DOCK9Q9BZ29 2069 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 PI4KAP42356 2102 aa19.21■□□□□ 0.67
SQSTM1-216ENST00000626660 LATO43561 262 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 NDST3O95803 873 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 PRLP01236 227 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 IGHV4-34P06331 123 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 RETP07949 1114 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 ITIH2P19823 946 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 ITPKAP23677 461 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 CD27P26842 260 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 MAT2AP31153 395 aaKnown RBP19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms