RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 COPS5Q92905 334 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 OPALINQ96PE5 141 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 CDRT15Q96T59 188 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SENP7Q9BQF6 1050 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 ACSS3Q9H6R3 686 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 DNAJC28Q9NX36 388 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SYBUQ9NX95 663 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 RNF181Q9P0P0 153 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 FBXO40Q9UH90 709 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.29□□□□□ -0.76
VPS39-214ENST00000614932 ADAMTS5Q9UNA0 930 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SOWAHBA6NEL2 793 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 PDZK1P1A8MUH7 402 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SULT1B1O43704 296 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 ITGB3P05106 788 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 KRT7P08729 469 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 MSX2P35548 267 aaPredicted RBP10.29□□□□□ -0.76
VPS39-214ENST00000614932 NR2C2P49116 596 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 HARS2P49590 506 aaKnown RBP10.29□□□□□ -0.76
VPS39-214ENST00000614932 NME5P56597 212 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 FMO1Q01740 532 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 ALCAMQ13740 583 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 DESI1Q6ICB0 168 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 MAMDC4Q6UXC1 1216 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SH2D5Q6ZV89 423 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 TFAP2DQ7Z6R9 452 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SULF1Q8IWU6 871 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 C12orf56Q8IXR9 622 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 GPD1LQ8N335 351 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 POC5Q8NA72 575 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 OR2T3Q8NH03 318 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 ZFPM2Q8WW38 1151 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 VCPIP1Q96JH7 1222 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 NT5C1BQ96P26 610 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 ASB2Q96Q27 587 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 TXNRD2Q9NNW7 524 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 ACOXLQ9NUZ1 547 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 CSADQ9Y600 493 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 CEP350Q5VT06 3117 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 C2orf81A6NN90 581 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 K7ERI5 159 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 TOR1BO14657 336 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 KPNA6O60684 536 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 ARIH2O95376 493 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 CYP11B1P15538 503 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 ME2P23368 584 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 GLRA2P23416 452 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 GJC1P36383 396 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 GRIA1P42261 906 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 PPP5CP53041 499 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 MFAP3P55082 362 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 S100A12P80511 92 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 SYCE2Q6PIF2 218 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 LYSMD2Q8IV50 215 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 GPC2Q8N158 579 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 SCML4Q8N228 414 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 CCNYL1Q8N7R7 359 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 SLAIN1Q8ND83 568 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 FANK1Q8TC84 345 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 PPP1R13LQ8WUF5 828 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 LRTOMTQ8WZ04 291 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 GTF2H4Q92759 462 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 C20orf27Q9GZN8 174 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 SMOXQ9NWM0 555 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 COQ3Q9NZJ6 369 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 NOCTQ9UK39 431 aaKnown RBP10.28□□□□□ -0.76
VPS39-214ENST00000614932 VWA7Q9Y334 891 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 CTDSP2O14595 271 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 TSPAN4O14817 238 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 ATG13O75143 517 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 BCAS1O75363 584 aaPredicted RBP10.28□□□□□ -0.76
VPS39-214ENST00000614932 PIAS1O75925 651 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 IL18RAPO95256 599 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 TRIM16O95361 564 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 PTTG1O95997 202 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 IFNA16P05015 189 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 NCF2P19878 526 aaPredicted RBP10.28□□□□□ -0.76
VPS39-214ENST00000614932 ALAS2P22557 587 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 EEF1B2P24534 225 aaKnown RBP10.28□□□□□ -0.76
VPS39-214ENST00000614932 UQCRC1P31930 480 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 TNFSF9P41273 254 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 ALDH7A1P49419 539 aaKnown RBP10.28□□□□□ -0.76
VPS39-214ENST00000614932 SLC12A1Q13621 1099 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 XKR3Q5GH77 459 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 MTX3Q5HYI7 312 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 ABRAXAS1Q6UWZ7 409 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 ATP6V1E2Q96A05 226 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 C12orf42Q96LP6 360 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 WACQ9BTA9 647 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 BTBD2Q9BX70 525 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 YTHDF1Q9BYJ9 559 aaKnown RBP10.28□□□□□ -0.76
VPS39-214ENST00000614932 ZNF408Q9H9D4 720 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 TMEM8AQ9HCN3 771 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 TMEM216Q9P0N5 145 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 CPNE7Q9UBL6 633 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 CLUHO75153 1309 aa10.28□□□□□ -0.76
VPS39-214ENST00000614932 PHIPQ8WWQ0 1821 aa10.27□□□□□ -0.76
VPS39-214ENST00000614932 LEUTXA8MZ59 168 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 UPK1BO75841 260 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 FDX1P10109 184 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms