RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 MTSS1O43312 755 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 CPP00450 1065 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 CR2P20023 1033 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 CTNNA2P26232 953 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 CTNNA1P35221 906 aaKnown RBP19.5■□□□□ 0.71
UPF1-212ENST00000601689 RABIFP47224 123 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 EPHB1P54762 984 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 NXPH1P58417 271 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 PTK2BQ14289 1009 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 PPP2R5EQ16537 467 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 ZNF423Q2M1K9 1284 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 HS1BP3Q53T59 392 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 LAYNQ6UX15 382 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 TMEM145Q8NBT3 493 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 OR2I1PQ8NGU4 316 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 ECHDC3Q96DC8 303 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 DESI2Q9BSY9 194 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 WRAP53Q9BUR4 548 aaKnown RBP19.5■□□□□ 0.71
UPF1-212ENST00000601689 LACRTQ9GZZ8 138 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 GRPEL1Q9HAV7 217 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 NOD2Q9HC29 1040 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 KCTD5Q9NXV2 234 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 ITM2BQ9Y287 266 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 PCDHGC4Q9Y5F7 938 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 SLCO1B1Q9Y6L6 691 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 DUSP10Q9Y6W6 482 aa19.5■□□□□ 0.71
UPF1-212ENST00000601689 MIF4GDA9UHW6 222 aaKnown RBP19.49■□□□□ 0.71
UPF1-212ENST00000601689 MMP20O60882 483 aa19.49■□□□□ 0.71
UPF1-212ENST00000601689 KCNK5O95279 499 aa19.49■□□□□ 0.71
UPF1-212ENST00000601689 ITGAVP06756 1048 aa19.49■□□□□ 0.71
UPF1-212ENST00000601689 ELFN1P0C7U0 828 aa19.49■□□□□ 0.71
UPF1-212ENST00000601689 TNNT3P45378 269 aaPredicted RBP19.49■□□□□ 0.71
UPF1-212ENST00000601689 SLC10A2Q12908 348 aaPredicted RBP19.49■□□□□ 0.71
UPF1-212ENST00000601689 LRRC73Q5JTD7 316 aa19.49■□□□□ 0.71
UPF1-212ENST00000601689 PSAPL1Q6NUJ1 521 aa19.49■□□□□ 0.71
UPF1-212ENST00000601689 USP45Q70EL2 814 aa19.49■□□□□ 0.71
UPF1-212ENST00000601689 PTAR1Q7Z6K3 402 aaPredicted RBP19.49■□□□□ 0.71
UPF1-212ENST00000601689 TFB1MQ8WVM0 346 aaKnown RBP19.49■□□□□ 0.71
UPF1-212ENST00000601689 FZD3Q9NPG1 666 aa19.49■□□□□ 0.71
UPF1-212ENST00000601689 SALL4Q9UJQ4 1053 aa19.49■□□□□ 0.71
UPF1-212ENST00000601689 DNPEPQ9ULA0 475 aa19.49■□□□□ 0.71
UPF1-212ENST00000601689 EFR3BQ9Y2G0 817 aa19.49■□□□□ 0.71
UPF1-212ENST00000601689 CABIN1Q9Y6J0 2220 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 A0A1B0GTQ1 180 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 H0Y8X5 98 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 HTRA2O43464 458 aaPredicted RBP19.48■□□□□ 0.71
UPF1-212ENST00000601689 PCDHGA12O60330 932 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 GJB3O75712 270 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 ZNF189O75820 626 aaPredicted RBP19.48■□□□□ 0.71
UPF1-212ENST00000601689 JCHAINP01591 159 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 WNT1P04628 370 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 CCDC175P0C221 793 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 THOP1P52888 689 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 BNC1Q01954 994 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 ARHGEF7Q14155 803 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 KYAT3Q6YP21 454 aaKnown RBP19.48■□□□□ 0.71
UPF1-212ENST00000601689 Q6ZSR6 202 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 NAXDQ8IW45 347 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 PGBD5Q8N414 524 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 DEFB124Q8NES8 71 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 LGMNQ99538 433 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 CDC6Q99741 560 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 SEPT10Q9P0V9 454 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 GGT7Q9UJ14 662 aa19.48■□□□□ 0.71
UPF1-212ENST00000601689 FNDC3AQ9Y2H6 1198 aaKnown RBP19.48■□□□□ 0.71
UPF1-212ENST00000601689 hCG_1818297A0A087WSY0 165 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 GOLGA6L9A6NEM1 432 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 KCNK1O00180 336 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 TRAFD1O14545 582 aaPredicted RBP19.47■□□□□ 0.71
UPF1-212ENST00000601689 KCNK3O14649 394 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 WNT9AO14904 365 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 TJP3O95049 919 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 CD59P13987 128 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 MMP12P39900 470 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 GRK6P43250 576 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 LIG3P49916 1009 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 YPEL5P62699 121 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 IFI35P80217 286 aaPredicted RBP19.47■□□□□ 0.71
UPF1-212ENST00000601689 LRRC14Q15048 493 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 TAZQ16635 292 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 ABI3BPQ7Z7G0 1075 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 LRRC8AQ8IWT6 810 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 ATL2Q8NHH9 583 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 RHBDD1Q8TEB9 315 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 SPOCK2Q92563 424 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 KRT35Q92764 455 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 HAUS1Q96CS2 278 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 IFT43Q96FT9 208 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 IL21RQ9HBE5 538 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 RAI2Q9Y5P3 530 aa19.47■□□□□ 0.71
UPF1-212ENST00000601689 PCNX2A6NKB5 2137 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 TTC24A2A3L6 582 aaPredicted RBP19.46■□□□□ 0.71
UPF1-212ENST00000601689 GRID2IPA4D2P6 1211 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 HACD1B0YJ81 288 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 H3BM21 787 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 SH3BP5O60239 455 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 PGLSO95336 258 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 C6P13671 934 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 HTR1BP28222 390 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 RXRGP48443 463 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms