RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 EBNA1BP2Q99848 306 aaKnown RBP20.56■□□□□ 0.88
UPF1-207ENST00000599848 CEP41Q9BYV8 373 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 RNPEPQ9H4A4 650 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 LEF1Q9UJU2 399 aaPredicted RBP20.56■□□□□ 0.88
UPF1-207ENST00000599848 EML1O00423 815 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 DGKKQ5KSL6 1271 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 CDKAL1Q5VV42 579 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 C5orf34Q96MH7 638 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 MMADHCQ9H3L0 296 aaPredicted RBP20.56■□□□□ 0.88
UPF1-207ENST00000599848 CRTAC1Q9NQ79 661 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 COPS7AQ9UBW8 275 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 SORCS3Q9UPU3 1222 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 TLX3O43711 291 aaPredicted RBP20.55■□□□□ 0.88
UPF1-207ENST00000599848 AGXTP21549 392 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 TOB1P50616 345 aaPredicted RBP20.55■□□□□ 0.88
UPF1-207ENST00000599848 RPL14P50914 215 aaKnown RBP20.55■□□□□ 0.88
UPF1-207ENST00000599848 OVGP1Q12889 678 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 TAF10Q12962 218 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 TOP3AQ13472 1001 aaPredicted RBP20.55■□□□□ 0.88
UPF1-207ENST00000599848 NTRK3Q16288 839 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 VPS26BQ4G0F5 336 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 PHF13Q86YI8 300 aaPredicted RBP20.55■□□□□ 0.88
UPF1-207ENST00000599848 ZNF671Q8TAW3 534 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 BCL2L14Q9BZR8 327 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 NRDE2Q9H7Z3 1164 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 ARHGEF4Q9NR80 690 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 TMCC2O75069 709 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 RCVRNP35243 200 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 MAPKAPK2P49137 400 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 ARMC8Q8IUR7 673 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 DEPDC4Q8N2C3 294 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 BRSK1Q8TDC3 778 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 TEKT5Q96M29 485 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 TAPBPLQ9BX59 468 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 RBM7Q9Y580 266 aaKnown RBP20.55■□□□□ 0.88
UPF1-207ENST00000599848 RHOQP17081 205 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 ITPKBP27987 946 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 CDH4P55283 916 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 ABRQ12979 859 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 GJD3Q8N144 294 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 KREMEN2Q8NCW0 462 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 OR4L1Q8NH43 312 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 SH3GLB1Q9Y371 365 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 ZNF536O15090 1300 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 COL6A1P12109 1028 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 BGNP21810 368 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 DGKGP49619 791 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 SF1Q15637 639 aaKnown RBP20.55■□□□□ 0.88
UPF1-207ENST00000599848 OSGEPQ9NPF4 335 aa20.55■□□□□ 0.88
UPF1-207ENST00000599848 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.55■□□□□ 0.88
UPF1-207ENST00000599848 EOGTQ5NDL2 527 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 GPRIN3Q6ZVF9 776 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 RASGEF1AQ8N9B8 481 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 EPS8L3Q8TE67 593 aaKnown RBP20.54■□□□□ 0.88
UPF1-207ENST00000599848 RNF157Q96PX1 679 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 MRPL57Q9BQC6 102 aaKnown RBP20.54■□□□□ 0.88
UPF1-207ENST00000599848 HDHD2Q9H0R4 259 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 A0A1B0GVM2 712 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 MAGEA13PA6NCF6 341 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 TCAF2A6NFQ2 919 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 PRG2P13727 222 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 CORO1AP31146 461 aaKnown RBP20.54■□□□□ 0.88
UPF1-207ENST00000599848 SPAM1P38567 509 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 CRTC3Q6UUV7 619 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 PTCD2Q8WV60 388 aaKnown RBP20.54■□□□□ 0.88
UPF1-207ENST00000599848 CATSPER2Q96P56 530 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 INPP4AQ96PE3 977 aaPredicted RBP20.54■□□□□ 0.88
UPF1-207ENST00000599848 HEPHQ9BQS7 1158 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 SNRNP25Q9BV90 132 aaKnown RBP20.54■□□□□ 0.88
UPF1-207ENST00000599848 C5orf60A6NFR6 353 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 NEMP2A6NFY4 417 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 GIMD1P0DJR0 217 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 CCNA2P20248 432 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 NUMBP49757 651 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 INTS6LQ5JSJ4 861 aaKnown RBP20.54■□□□□ 0.88
UPF1-207ENST00000599848 TRAF7Q6Q0C0 670 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 PIWIL4Q7Z3Z4 852 aaKnown RBP20.54■□□□□ 0.88
UPF1-207ENST00000599848 ZDHHC13Q8IUH4 622 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 DLG3Q92796 817 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 ACBD6Q9BR61 282 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 SLC35G6P0C7Q6 338 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 HSMCR30P0CW71 290 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 WDR93Q6P2C0 686 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 CCDC103Q8IW40 242 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 ZCCHC9Q8N567 271 aaKnown RBP20.54■□□□□ 0.88
UPF1-207ENST00000599848 ZNF398Q8TD17 642 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 AP2M1Q96CW1 435 aa20.54■□□□□ 0.88
UPF1-207ENST00000599848 H0Y858 1186 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 ERAL1O75616 437 aaKnown RBP20.53■□□□□ 0.88
UPF1-207ENST00000599848 RARAP10276 462 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 PSMB4P28070 264 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 MKRN4PQ13434 485 aaPredicted RBP20.53■□□□□ 0.88
UPF1-207ENST00000599848 CNKSR3Q6P9H4 555 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 PTGR2Q8N8N7 351 aaPredicted RBP20.53■□□□□ 0.88
UPF1-207ENST00000599848 FBXO25Q8TCJ0 367 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 PPCDCQ96CD2 204 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 FCRL2Q96LA5 508 aaPredicted RBP20.53■□□□□ 0.88
UPF1-207ENST00000599848 CDK14O94921 469 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 FSBPO95073 299 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 ACADLP28330 430 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms