RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 GLMNQ92990 594 aa18.9■□□□□ 0.62
PNKP-213ENST00000599543 MRFAP1L1Q96HT8 127 aa18.9■□□□□ 0.62
PNKP-213ENST00000599543 ZNF641Q96N77 438 aaPredicted RBP18.9■□□□□ 0.62
PNKP-213ENST00000599543 SNRNP25Q9BV90 132 aaKnown RBP18.9■□□□□ 0.62
PNKP-213ENST00000599543 LRRC61Q9BV99 259 aa18.9■□□□□ 0.62
PNKP-213ENST00000599543 TCEAL2Q9H3H9 227 aaPredicted RBP18.9■□□□□ 0.62
PNKP-213ENST00000599543 SUV39H2Q9H5I1 410 aa18.9■□□□□ 0.62
PNKP-213ENST00000599543 MBNL1Q9NR56 388 aaKnown RBP18.9■□□□□ 0.62
PNKP-213ENST00000599543 ZNHIT6Q9NWK9 470 aaKnown RBP18.9■□□□□ 0.62
PNKP-213ENST00000599543 PCSK1NQ9UHG2 260 aa18.9■□□□□ 0.62
PNKP-213ENST00000599543 SALL4Q9UJQ4 1053 aa18.9■□□□□ 0.62
PNKP-213ENST00000599543 TSPAN11A1L157 253 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 PRPSAP2O60256 369 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 USP12O75317 370 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 GCATO75600 419 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 RNF8O76064 485 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 GZMAP12544 262 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 C6P13671 934 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 RPIAP49247 311 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 PAPOLAP51003 745 aaKnown RBP18.89■□□□□ 0.61
PNKP-213ENST00000599543 PPARDQ03181 441 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 ACAP1Q15027 740 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 LRRC14Q15048 493 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 TSR1Q2NL82 804 aaKnown RBP18.89■□□□□ 0.61
PNKP-213ENST00000599543 TMEM52BQ4KMG9 183 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 FAXCQ5TGI0 409 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 GUSBP11Q6P575 273 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 BRAT1Q6PJG6 821 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 RFX8Q6ZV50 586 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 EFL1Q7Z2Z2 1120 aaKnown RBP18.89■□□□□ 0.61
PNKP-213ENST00000599543 TC2NQ8N9U0 490 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 SPC24Q8NBT2 197 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 TBATAQ96M53 351 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 TUBGCP5Q96RT8 1024 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 ANP32EQ9BTT0 268 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 PACSIN1Q9BY11 444 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 ISCUQ9H1K1 167 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 SP110Q9HB58 689 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 PCDH12Q9NPG4 1184 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 SPTLC3Q9NUV7 552 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 COQ6Q9Y2Z9 468 aa18.89■□□□□ 0.61
PNKP-213ENST00000599543 COL27A1Q8IZC6 1860 aaPredicted RBP18.88■□□□□ 0.61
PNKP-213ENST00000599543 TMEM191CA6NGB0 347 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 EIF4E1BA6NMX2 242 aaKnown RBP18.88■□□□□ 0.61
PNKP-213ENST00000599543 LMO7DNF2Z398 122 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 MUSKO15146 869 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 PALMO75781 387 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 MPOP05164 745 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 ANXA6P08133 673 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 TGM2P21980 687 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 SERPINA4P29622 427 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 BLKP51451 505 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 GABREP78334 506 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 C1orf61Q13536 156 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 CA9Q16790 459 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 PPP6R3Q5H9R7 873 aaPredicted RBP18.88■□□□□ 0.61
PNKP-213ENST00000599543 C6orf132Q5T0Z8 1188 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 ALKBH5Q6P6C2 394 aaKnown RBP18.88■□□□□ 0.61
PNKP-213ENST00000599543 CNGA4Q8IV77 575 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 PAF1Q8N7H5 531 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 FNIP1Q8TF40 1166 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 PEBP4Q96S96 227 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 KCTD15Q96SI1 283 aaPredicted RBP18.88■□□□□ 0.61
PNKP-213ENST00000599543 CINPQ9BW66 212 aaPredicted RBP18.88■□□□□ 0.61
PNKP-213ENST00000599543 BOCQ9BWV1 1114 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 SLC39A8Q9C0K1 460 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 THAP2Q9H0W7 228 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 DEF6Q9H4E7 631 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 ATP13A3Q9H7F0 1226 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 PNMA8BQ9ULN7 279 aaPredicted RBP18.88■□□□□ 0.61
PNKP-213ENST00000599543 SCINQ9Y6U3 715 aa18.88■□□□□ 0.61
PNKP-213ENST00000599543 EME2A4GXA9 379 aaPredicted RBP18.87■□□□□ 0.61
PNKP-213ENST00000599543 TMEM110-MUSTN1A8MSY1 372 aa18.87■□□□□ 0.61
PNKP-213ENST00000599543 DFFAO00273 331 aa18.87■□□□□ 0.61
PNKP-213ENST00000599543 TSHRP16473 764 aa18.87■□□□□ 0.61
PNKP-213ENST00000599543 HTR1BP28222 390 aa18.87■□□□□ 0.61
PNKP-213ENST00000599543 MMP12P39900 470 aa18.87■□□□□ 0.61
PNKP-213ENST00000599543 PEX5P50542 639 aa18.87■□□□□ 0.61
PNKP-213ENST00000599543 PCBP4P57723 403 aaKnown RBP18.87■□□□□ 0.61
PNKP-213ENST00000599543 CCDC173Q0VFZ6 552 aa18.87■□□□□ 0.61
PNKP-213ENST00000599543 KIF26BQ2KJY2 2108 aa18.87■□□□□ 0.61
PNKP-213ENST00000599543 CAMK1DQ8IU85 385 aa18.87■□□□□ 0.61
PNKP-213ENST00000599543 LSMEM2Q8N112 164 aa18.87■□□□□ 0.61
PNKP-213ENST00000599543 ARFGAP1Q8N6T3 406 aa18.87■□□□□ 0.61
PNKP-213ENST00000599543 TPCN2Q8NHX9 752 aa18.87■□□□□ 0.61
PNKP-213ENST00000599543 ZNF578Q96N58 590 aaPredicted RBP18.87■□□□□ 0.61
PNKP-213ENST00000599543 NHEJ1Q9H9Q4 299 aaPredicted RBP18.87■□□□□ 0.61
PNKP-213ENST00000599543 DOLKQ9UPQ8 538 aa18.87■□□□□ 0.61
PNKP-213ENST00000599543 ATP8A1Q9Y2Q0 1164 aa18.87■□□□□ 0.61
PNKP-213ENST00000599543 AKR1B10O60218 316 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 LZTS3O60299 673 aaPredicted RBP18.86■□□□□ 0.61
PNKP-213ENST00000599543 BUB1BO60566 1050 aaPredicted RBP18.86■□□□□ 0.61
PNKP-213ENST00000599543 ERCC2P18074 760 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 MIPP30301 263 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 CSNK1DP48730 415 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 LIG3P49916 1009 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 ZNF135P52742 658 aaPredicted RBP18.86■□□□□ 0.61
PNKP-213ENST00000599543 HK3P52790 923 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 ISXQ2M1V0 245 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 ASTE1Q2TB18 679 aaPredicted RBP18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms