RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.17■□□□□ 0.02
LIG1-215ENST00000597901 TMEM110-MUSTN1A8MSY1 372 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 AQP9O43315 295 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 PROSCO94903 275 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 CD48P09326 243 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 CR2P20023 1033 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 HNF1BP35680 557 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 HSPA9P38646 679 aaKnown RBP15.17■□□□□ 0.02
LIG1-215ENST00000597901 PEX5P50542 639 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 AP1S1P61966 158 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 INPP5AQ14642 412 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 AGERQ15109 404 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 IRF4Q15306 451 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 TSR1Q2NL82 804 aaKnown RBP15.17■□□□□ 0.02
LIG1-215ENST00000597901 FAXCQ5TGI0 409 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 HES3Q5TGS1 186 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 VSTM4Q8IW00 320 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 CACTIN-AS1Q8N1I8 211 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 PGBD5Q8N414 524 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 PAF1Q8N7H5 531 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 KCTD6Q8NC69 237 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 CTNNBL1Q8WYA6 563 aaPredicted RBP15.17■□□□□ 0.02
LIG1-215ENST00000597901 RFFLQ8WZ73 363 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 CHP1Q99653 195 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 APOOQ9BUR5 198 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 TCEAL2Q9H3H9 227 aaPredicted RBP15.17■□□□□ 0.02
LIG1-215ENST00000597901 ZNHIT6Q9NWK9 470 aaKnown RBP15.17■□□□□ 0.02
LIG1-215ENST00000597901 RCOR3Q9P2K3 495 aaPredicted RBP15.17■□□□□ 0.02
LIG1-215ENST00000597901 UVRAGQ9P2Y5 699 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 SPASTQ9UBP0 616 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 DKK4Q9UBT3 224 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 PNMA8BQ9ULN7 279 aaPredicted RBP15.17■□□□□ 0.02
LIG1-215ENST00000597901 PCDHGC4Q9Y5F7 938 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 AKAP13Q12802 2813 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 USP24Q9UPU5 2620 aa15.17■□□□□ 0.02
LIG1-215ENST00000597901 TRPM6Q9BX84 2022 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 COL5A1P20908 1838 aaPredicted RBP15.16■□□□□ 0.02
LIG1-215ENST00000597901 LY6G6EA0A0G2JKS1 128 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 SSU72P8A0A1W2PR75 194 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 A8MX80 341 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 TPP1O14773 563 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 AKR1B10O60218 316 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 GCATO75600 419 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 SERPINB6P35237 376 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 MMP12P39900 470 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 DUSP3P51452 185 aaPredicted RBP15.16■□□□□ 0.02
LIG1-215ENST00000597901 ADKP55263 362 aaKnown RBP15.16■□□□□ 0.02
LIG1-215ENST00000597901 TAS2R40P59535 323 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 INSM1Q01101 510 aaPredicted RBP15.16■□□□□ 0.02
LIG1-215ENST00000597901 RALGDSQ12967 914 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 C1orf61Q13536 156 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 TRIM14Q14142 442 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 ZNF235Q14590 738 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 MARC1Q5VT66 337 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 LIPIQ6XZB0 460 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 LRRC49Q8IUZ0 686 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 RBFAQ8N0V3 343 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 BBS5Q8N3I7 341 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 RNF214Q8ND24 703 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 PCDH19Q8TAB3 1148 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 NSMCE1Q8WV22 266 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 NUDCD1Q96RS6 583 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 DEF6Q9H4E7 631 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 USP29Q9HBJ7 922 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 NOD2Q9HC29 1040 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 SCUBE2Q9NQ36 999 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 SALL4Q9UJQ4 1053 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 LHX6Q9UPM6 363 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 U3KQA8 63 aa15.16■□□□□ 0.02
LIG1-215ENST00000597901 A0A1W2PQ67 120 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 YY2O15391 372 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 HTRA2O43464 458 aaPredicted RBP15.15■□□□□ 0.02
LIG1-215ENST00000597901 RECQL5O94762 991 aaPredicted RBP15.15■□□□□ 0.02
LIG1-215ENST00000597901 MT-CO3P00414 261 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 TMEM253P0C7T8 217 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 PPARDQ03181 441 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 DPYSL3Q14195 570 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 PAFAH1B3Q15102 231 aaKnown RBP15.15■□□□□ 0.02
LIG1-215ENST00000597901 PDK2Q15119 407 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 DEFB133Q30KQ1 61 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 ANKRD20A8PQ5CZ79 823 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 PRRT3Q5FWE3 981 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 ZCCHC8Q6NZY4 707 aaKnown RBP15.15■□□□□ 0.02
LIG1-215ENST00000597901 ENPP7Q6UWV6 458 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 MACC1Q6ZN28 852 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 DPPA4Q7L190 304 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 MAP7D3Q8IWC1 876 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 PHACTR4Q8IZ21 702 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 ATPAF2Q8N5M1 289 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 TEX26Q8N6G2 289 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 SPOCK2Q92563 424 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 TSACCQ96A04 125 aaPredicted RBP15.15■□□□□ 0.02
LIG1-215ENST00000597901 TBATAQ96M53 351 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 IL12RB2Q99665 862 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 MGME1Q9BQP7 344 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 SLC13A1Q9BZW2 595 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 APOBEC3BQ9UH17 382 aaKnown RBP15.15■□□□□ 0.02
LIG1-215ENST00000597901 RALYQ9UKM9 306 aaKnown RBP15.15■□□□□ 0.02
LIG1-215ENST00000597901 CLCA2Q9UQC9 943 aa15.15■□□□□ 0.02
LIG1-215ENST00000597901 PLXNB3Q9ULL4 1909 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms