RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 FBXL19Q6PCT2 694 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 FOXR1Q6PIV2 292 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 TMCO3Q6UWJ1 677 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 GDPD4Q6W3E5 623 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 IQCHQ86VS3 1027 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 MFSD2AQ8NA29 543 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 SLC35G2Q8TBE7 412 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 RFFLQ8WZ73 363 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 RAB7BQ96AH8 199 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 FAF2Q96CS3 445 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 EXOC2Q96KP1 924 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 KLHL32Q96NJ5 620 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 AASDHPPTQ9NRN7 309 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 TM7SF3Q9NS93 570 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 DKK3Q9UBP4 350 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 IPO11Q9UI26 975 aaKnown RBP11.34□□□□□ -0.59
SMAD4-211ENST00000590499 INTUQ9ULD6 942 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 PCDHGB2Q9Y5G2 931 aa11.34□□□□□ -0.59
SMAD4-211ENST00000590499 WDFY3Q8IZQ1 3526 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 PRAMEF26H0Y7S4 382 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 H0Y8X5 98 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 TLR4O00206 839 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 MUSKO15146 869 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 SH3BP5O60239 455 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 PCDHGA12O60330 932 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 CBFA2T3O75081 653 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 PIGNO95427 931 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 PRLRP16471 622 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 PMLP29590 882 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 SOX11P35716 441 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 NXPH1P58417 271 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 RAD51Q06609 339 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 KRT81Q14533 505 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 RFTN1Q14699 578 aaPredicted RBP11.33□□□□□ -0.6
SMAD4-211ENST00000590499 SHBQ15464 509 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 TMCO4Q5TGY1 634 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 KIAA1161Q6NSJ0 714 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 ADAT2Q7Z6V5 191 aaKnown RBP11.33□□□□□ -0.6
SMAD4-211ENST00000590499 ZSCAN30Q86W11 494 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 SPATS2Q86XZ4 545 aaKnown RBP11.33□□□□□ -0.6
SMAD4-211ENST00000590499 NAXDQ8IW45 347 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 RHOT2Q8IXI1 618 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 TSEN2Q8NCE0 465 aaKnown RBP11.33□□□□□ -0.6
SMAD4-211ENST00000590499 PCDH19Q8TAB3 1148 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 BAHD1Q8TBE0 780 aaPredicted RBP11.33□□□□□ -0.6
SMAD4-211ENST00000590499 NSMCE3Q96MG7 304 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 ZNF599Q96NL3 588 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 PSKH2Q96QS6 385 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 ZNF670Q9BS34 389 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 SP110Q9HB58 689 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 ETNK1Q9HBU6 452 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 KLHL11Q9NVR0 708 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 GGT7Q9UJ14 662 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 ITM2BQ9Y287 266 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 CA5BQ9Y2D0 317 aa11.33□□□□□ -0.6
SMAD4-211ENST00000590499 AKAP13Q12802 2813 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 A0A1B0GTQ1 180 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 KCNK3O14649 394 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 SLC31A1O15431 190 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 TSPAN6O43657 245 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 MFSD11O43934 449 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 BUB1BO60566 1050 aaPredicted RBP11.32□□□□□ -0.6
SMAD4-211ENST00000590499 MAFKO60675 156 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 PALMO75781 387 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 PCDH8O95206 1070 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 KRT7P08729 469 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 CR2P20023 1033 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 HNRNPA2B1P22626 353 aaKnown RBP11.32□□□□□ -0.6
SMAD4-211ENST00000590499 SERPINB6P35237 376 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 ARHGAP25P42331 645 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 SSR1P43307 286 aaKnown RBP11.32□□□□□ -0.6
SMAD4-211ENST00000590499 CCT8P50990 548 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 C21orf59P57076 290 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 RPS21P63220 83 aaKnown RBP11.32□□□□□ -0.6
SMAD4-211ENST00000590499 FAM193AP78312 1265 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 NSUN2Q08J23 767 aaKnown RBP eCLIP11.32□□□□□ -0.6
SMAD4-211ENST00000590499 SLC10A7Q0GE19 358 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 OVGP1Q12889 678 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 MESDQ14696 234 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 GRM3Q14832 879 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 PAFAH1B3Q15102 231 aaKnown RBP11.32□□□□□ -0.6
SMAD4-211ENST00000590499 PDK2Q15119 407 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 NCBP2-AS2Q69YL0 99 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 GCNT7Q6ZNI0 430 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 ABI3BPQ7Z7G0 1075 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 ZSWIM9Q86XI8 627 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 PQLC3Q8N755 202 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 HCAR2Q8TDS4 363 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 KLK6Q92876 244 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 GTPBP3Q969Y2 492 aaKnown RBP11.32□□□□□ -0.6
SMAD4-211ENST00000590499 SKA1Q96BD8 255 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 ECHDC3Q96DC8 303 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 ZNF641Q96N77 438 aaPredicted RBP11.32□□□□□ -0.6
SMAD4-211ENST00000590499 CAMK1GQ96NX5 476 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 PANX2Q96RD6 677 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 TUBGCP5Q96RT8 1024 aa11.32□□□□□ -0.6
SMAD4-211ENST00000590499 ELF4Q99607 663 aaPredicted RBP11.32□□□□□ -0.6
SMAD4-211ENST00000590499 KLF6Q99612 283 aaPredicted RBP11.32□□□□□ -0.6
SMAD4-211ENST00000590499 CINPQ9BW66 212 aaPredicted RBP11.32□□□□□ -0.6
SMAD4-211ENST00000590499 SLC32A1Q9H598 525 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms