RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 EXOC3O60645 756 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 APOEP02649 317 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 FYNP06241 537 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 TIMP2P16035 220 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 ZNF28P17035 718 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 PIK3CAP42336 1068 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 RAD23BP54727 409 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 DLG4P78352 724 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 BST2Q10589 180 aaKnown RBP16.33■□□□□ 0.2
VPS53-218ENST00000575207 DNASE1L3Q13609 305 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 KLHL40Q2TBA0 621 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 RRAGBQ5VZM2 374 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 ZNF517Q6ZMY9 492 aaPredicted RBP16.33■□□□□ 0.2
VPS53-218ENST00000575207 FDCSPQ8NFU4 85 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 CCL4L1Q8NHW4 92 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 ITLN2Q8WWU7 325 aaPredicted RBP16.33■□□□□ 0.2
VPS53-218ENST00000575207 OR1E3Q8WZA6 343 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 NUDT9Q9BW91 350 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 IMPG2Q9BZV3 1241 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 SPATS2LQ9NUQ6 558 aaKnown RBP16.33■□□□□ 0.2
VPS53-218ENST00000575207 CHD5Q8TDI0 1954 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 PRRC2AP48634 2157 aaKnown RBP16.33■□□□□ 0.2
VPS53-218ENST00000575207 MMP20O60882 483 aa16.32■□□□□ 0.2
VPS53-218ENST00000575207 GABBR2O75899 941 aa16.32■□□□□ 0.2
VPS53-218ENST00000575207 FGF1P05230 155 aa16.32■□□□□ 0.2
VPS53-218ENST00000575207 STSP08842 583 aa16.32■□□□□ 0.2
VPS53-218ENST00000575207 LCP1P13796 627 aa16.32■□□□□ 0.2
VPS53-218ENST00000575207 CASP14P31944 242 aa16.32■□□□□ 0.2
VPS53-218ENST00000575207 NEK4P51957 841 aa16.32■□□□□ 0.2
VPS53-218ENST00000575207 GPLD1P80108 840 aa16.32■□□□□ 0.2
VPS53-218ENST00000575207 GOLGA7BQ2TAP0 167 aa16.32■□□□□ 0.2
VPS53-218ENST00000575207 CXXC5Q7LFL8 322 aaKnown RBP16.32■□□□□ 0.2
VPS53-218ENST00000575207 GALNT6Q8NCL4 622 aa16.32■□□□□ 0.2
VPS53-218ENST00000575207 CGNQ9P2M7 1197 aaKnown RBP16.32■□□□□ 0.2
VPS53-218ENST00000575207 TSPAN16Q9UKR8 245 aa16.32■□□□□ 0.2
VPS53-218ENST00000575207 B3GNT3Q9Y2A9 372 aa16.32■□□□□ 0.2
VPS53-218ENST00000575207 NTNG1Q9Y2I2 539 aa16.32■□□□□ 0.2
VPS53-218ENST00000575207 ABCA4P78363 2273 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 KCNU1A8MYU2 1149 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 PPM1DO15297 605 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 ECEL1O95672 775 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 INPP5AQ14642 412 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 LRRC14Q15048 493 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 WSCD2Q2TBF2 565 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 ZC3H12AQ5D1E8 599 aaKnown RBP16.31■□□□□ 0.2
VPS53-218ENST00000575207 FBXL22Q6P050 247 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 FJX1Q86VR8 437 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 TGIF2LYQ8IUE0 185 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 TTC39CQ8N584 583 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 ZDHHC1Q8WTX9 485 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 SMAD5Q99717 465 aaKnown RBP16.31■□□□□ 0.2
VPS53-218ENST00000575207 BACH2Q9BYV9 841 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 MUC3BQ9H195 1237 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 FGF22Q9HCT0 170 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 TMEM63CQ9P1W3 806 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 G3BP2Q9UN86 482 aaKnown RBP16.31■□□□□ 0.2
VPS53-218ENST00000575207 OR1A2Q9Y585 309 aa16.31■□□□□ 0.2
VPS53-218ENST00000575207 SSU72P8A0A1W2PR75 194 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 A8MU76 341 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 C21orf140B9A014 251 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 IKBKBO14920 756 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 KCNN4O15554 427 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 ENDOD1O94919 500 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 GARSP41250 739 aaKnown RBP16.3■□□□□ 0.2
VPS53-218ENST00000575207 CCNHP51946 323 aaPredicted RBP16.3■□□□□ 0.2
VPS53-218ENST00000575207 NDST2P52849 883 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 IRX6P78412 446 aaPredicted RBP16.3■□□□□ 0.2
VPS53-218ENST00000575207 ZNF805Q5CZA5 627 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 TAC4Q86UU9 113 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 NELFCDQ8IXH7 590 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 OR56A4Q8NGH8 313 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 STAMBPL1Q96FJ0 436 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 CEP44Q9C0F1 390 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 ZSCAN16Q9H4T2 348 aaPredicted RBP16.3■□□□□ 0.2
VPS53-218ENST00000575207 ACTL8Q9H568 366 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 AGPAT4Q9NRZ5 378 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 SIDT1Q9NXL6 827 aaKnown RBP16.3■□□□□ 0.2
VPS53-218ENST00000575207 TFIP11Q9UBB9 837 aaKnown RBP16.3■□□□□ 0.2
VPS53-218ENST00000575207 USP25Q9UHP3 1055 aa16.3■□□□□ 0.2
VPS53-218ENST00000575207 TMEM202A6NGA9 273 aa16.29■□□□□ 0.2
VPS53-218ENST00000575207 BMP15O95972 392 aa16.29■□□□□ 0.2
VPS53-218ENST00000575207 HNRNPH3P31942 346 aaKnown RBP16.29■□□□□ 0.2
VPS53-218ENST00000575207 IRAK1P51617 712 aa16.29■□□□□ 0.2
VPS53-218ENST00000575207 DNM1Q05193 864 aaKnown RBP16.29■□□□□ 0.2
VPS53-218ENST00000575207 ZNF235Q14590 738 aa16.29■□□□□ 0.2
VPS53-218ENST00000575207 CARD16Q5EG05 197 aa16.29■□□□□ 0.2
VPS53-218ENST00000575207 KCNMB4Q86W47 210 aa16.29■□□□□ 0.2
VPS53-218ENST00000575207 PCDH20Q8N6Y1 951 aaKnown RBP16.29■□□□□ 0.2
VPS53-218ENST00000575207 DCAF4L2Q8NA75 395 aa16.29■□□□□ 0.2
VPS53-218ENST00000575207 CXorf40AQ8TE69 158 aa16.29■□□□□ 0.2
VPS53-218ENST00000575207 CLEC4CQ8WTT0 213 aa16.29■□□□□ 0.2
VPS53-218ENST00000575207 RELTQ969Z4 430 aa16.29■□□□□ 0.2
VPS53-218ENST00000575207 RPRD1AQ96P16 312 aaPredicted RBP16.29■□□□□ 0.2
VPS53-218ENST00000575207 FAM13BQ9NYF5 915 aa16.29■□□□□ 0.2
VPS53-218ENST00000575207 C5AR2Q9P296 337 aa16.29■□□□□ 0.2
VPS53-218ENST00000575207 HESX1Q9UBX0 185 aa16.29■□□□□ 0.2
VPS53-218ENST00000575207 MDC1Q14676 2089 aaKnown RBP16.29■□□□□ 0.2
VPS53-218ENST00000575207 FLNAP21333 2647 aaKnown RBP16.29■□□□□ 0.2
VPS53-218ENST00000575207 FER1L5A0AVI2 2057 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 GOLGA6L3A6NEY3 463 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms