RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 TMCO4Q5TGY1 634 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 NYAP1Q6ZVC0 841 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 RBFAQ8N0V3 343 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 CACTIN-AS1Q8N1I8 211 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 CXorf40AQ8TE69 158 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 APOLD1Q96LR9 279 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 COQ6Q9Y2Z9 468 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 CSNK1G3Q9Y6M4 447 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 BPTFQ12830 3046 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 FASNP49327 2511 aaKnown RBP17.55■□□□□ 0.4
SMG6-214ENST00000573827 TTC24A2A3L6 582 aaPredicted RBP17.55■□□□□ 0.4
SMG6-214ENST00000573827 HTRA2O43464 458 aaPredicted RBP17.55■□□□□ 0.4
SMG6-214ENST00000573827 KALRNO60229 2985 aa17.55■□□□□ 0.4
SMG6-214ENST00000573827 GCATO75600 419 aa17.55■□□□□ 0.4
SMG6-214ENST00000573827 ARL4AP40617 200 aa17.55■□□□□ 0.4
SMG6-214ENST00000573827 LIG3P49916 1009 aa17.55■□□□□ 0.4
SMG6-214ENST00000573827 MMRN1Q13201 1228 aa17.55■□□□□ 0.4
SMG6-214ENST00000573827 LBRQ14739 615 aaKnown RBP17.55■□□□□ 0.4
SMG6-214ENST00000573827 SLC18A3Q16572 532 aa17.55■□□□□ 0.4
SMG6-214ENST00000573827 SKOR2Q2VWA4 1001 aaPredicted RBP17.55■□□□□ 0.4
SMG6-214ENST00000573827 ATP13A4Q4VNC1 1196 aa17.55■□□□□ 0.4
SMG6-214ENST00000573827 KCTD16Q68DU8 428 aa17.55■□□□□ 0.4
SMG6-214ENST00000573827 TMCO3Q6UWJ1 677 aa17.55■□□□□ 0.4
SMG6-214ENST00000573827 MACC1Q6ZN28 852 aa17.55■□□□□ 0.4
SMG6-214ENST00000573827 PDCD7Q8N8D1 485 aaKnown RBP17.55■□□□□ 0.4
SMG6-214ENST00000573827 DCBLD1Q8N8Z6 715 aa17.55■□□□□ 0.4
SMG6-214ENST00000573827 ZNF564Q8TBZ8 553 aaPredicted RBP17.55■□□□□ 0.4
SMG6-214ENST00000573827 FUBP1Q96AE4 644 aaKnown RBP17.55■□□□□ 0.4
SMG6-214ENST00000573827 CINPQ9BW66 212 aaPredicted RBP17.55■□□□□ 0.4
SMG6-214ENST00000573827 ATP13A3Q9H7F0 1226 aa17.55■□□□□ 0.4
SMG6-214ENST00000573827 RCOR3Q9P2K3 495 aaPredicted RBP17.55■□□□□ 0.4
SMG6-214ENST00000573827 SEPT3Q9UH03 358 aa17.55■□□□□ 0.4
SMG6-214ENST00000573827 RALYQ9UKM9 306 aaKnown RBP17.55■□□□□ 0.4
SMG6-214ENST00000573827 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.55■□□□□ 0.4
SMG6-214ENST00000573827 COL27A1Q8IZC6 1860 aaPredicted RBP17.54■□□□□ 0.4
SMG6-214ENST00000573827 CFAP69A5D8W1 941 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 MYO1FO00160 1098 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 TOR1BO14657 336 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 JUNDP17535 347 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 SERPINA4P29622 427 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 TAS2R40P59535 323 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 AP1S1P61966 158 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 CYP4F3Q08477 520 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 TARDBPQ13148 414 aaKnown RBP eCLIP17.54■□□□□ 0.4
SMG6-214ENST00000573827 IHHQ14623 411 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 CDCP2Q5VXM1 449 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 SPECC1LQ69YQ0 1117 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 VSTM4Q8IW00 320 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 CBARPQ8N350 705 aaPredicted RBP17.54■□□□□ 0.4
SMG6-214ENST00000573827 TBATAQ96M53 351 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 MGME1Q9BQP7 344 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 LRRC61Q9BV99 259 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 CLPBQ9H078 707 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 GPSM3Q9Y4H4 160 aa17.54■□□□□ 0.4
SMG6-214ENST00000573827 LRP4O75096 1905 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 AQP9O43315 295 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 PROSCO94903 275 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 SCNN1BP51168 640 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 DPYSL3Q14195 570 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 LRRC14Q15048 493 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 NFKBIBQ15653 356 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 LIPIQ6XZB0 460 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 DPPA4Q7L190 304 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 PHACTR4Q8IZ21 702 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 TEX26Q8N6G2 289 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 OR8K1Q8NGG5 319 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 PCDH19Q8TAB3 1148 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 FAF2Q96CS3 445 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 C1QTNF7Q9BXJ2 289 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 NOD2Q9HC29 1040 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 RAXQ9Y2V3 346 aa17.53■□□□□ 0.4
SMG6-214ENST00000573827 CFAP46Q8IYW2 2715 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 SSU72P8A0A1W2PR75 194 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 NEMP2A6NFY4 417 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 TPP1O14773 563 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 MFSD11O43934 449 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 CELA2BP08218 269 aaPredicted RBP17.52■□□□□ 0.4
SMG6-214ENST00000573827 JUPP14923 745 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 XPAP23025 273 aaPredicted RBP17.52■□□□□ 0.4
SMG6-214ENST00000573827 HSPA9P38646 679 aaKnown RBP17.52■□□□□ 0.4
SMG6-214ENST00000573827 PEX5P50542 639 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 RENBPP51606 427 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 CDH6P55285 790 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 BCL2L1Q07817 233 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 TRAF2Q12933 501 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 PTK2BQ14289 1009 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 NCBP2-AS2Q69YL0 99 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 ERAP2Q6P179 960 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 PELI3Q8N2H9 469 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 PQLC3Q8N755 202 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 PLA2G15Q8NCC3 412 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 NUDCD1Q96RS6 583 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 CHP1Q99653 195 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 DUSP23Q9BVJ7 150 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 BOCQ9BWV1 1114 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 USP29Q9HBJ7 922 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 UVRAGQ9P2Y5 699 aa17.52■□□□□ 0.4
SMG6-214ENST00000573827 LMO7DNF2Z398 122 aa17.51■□□□□ 0.39
SMG6-214ENST00000573827 H3BM21 787 aa17.51■□□□□ 0.39
SMG6-214ENST00000573827 LZTS3O60299 673 aaPredicted RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms