RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 FGF1P05230 155 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 PIRTP0C851 137 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 TFEBP19484 476 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 PRAMEP78395 509 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 IL31Q6EBC2 164 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 TLDC1Q6P9B6 456 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 SCUBE1Q8IWY4 988 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 ULK2Q8IYT8 1036 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 SH3RF2Q8TEC5 729 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 ANKRD49Q8WVL7 239 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 DNAJC1Q96KC8 554 aaKnown RBP20.39■□□□□ 0.85
CLN3-230ENST00000568076 TRIB3Q96RU7 358 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 THTPAQ9BU02 230 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 RNF38Q9H0F5 515 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 WDR55Q9H6Y2 383 aaPredicted RBP20.39■□□□□ 0.85
CLN3-230ENST00000568076 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.39■□□□□ 0.85
CLN3-230ENST00000568076 OGDHLQ9ULD0 1010 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 MTF2Q9Y483 593 aaPredicted RBP20.39■□□□□ 0.85
CLN3-230ENST00000568076 MICAL3Q7RTP6 2002 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 GOLGA8QA0A0J9YX86 632 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 GOLGA8OA6NCC3 632 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 NEMP2A6NFY4 417 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 GOLGA8NF8WBI6 632 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 HDAC3O15379 428 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 KRT36O76013 467 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 ABLIM3O94929 683 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 EPOP01588 193 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 LMNAP02545 664 aaKnown RBP20.38■□□□□ 0.85
CLN3-230ENST00000568076 CORO1AP31146 461 aaKnown RBP20.38■□□□□ 0.85
CLN3-230ENST00000568076 APLP1P51693 650 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 CDKN2DP55273 166 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 MXRA7P84157 204 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 SLC25A3Q00325 362 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 PRKAA1Q13131 559 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 BTG3Q14201 252 aaPredicted RBP20.38■□□□□ 0.85
CLN3-230ENST00000568076 TECRLQ5HYJ1 363 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 KIAA1841Q6NSI8 718 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 ANKRD33Q7Z3H0 272 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 RNF135Q8IUD6 432 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 OR13C4Q8NGS5 318 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 GABPB2Q8TAK5 448 aaPredicted RBP20.38■□□□□ 0.85
CLN3-230ENST00000568076 VWCEQ96DN2 955 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 SPON2Q9BUD6 331 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 OSBPL1AQ9BXW6 950 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 TCF7L2Q9NQB0 619 aa20.38■□□□□ 0.85
CLN3-230ENST00000568076 WISP3O95389 354 aaPredicted RBP20.37■□□□□ 0.85
CLN3-230ENST00000568076 SERPINF2P08697 491 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 COPAP53621 1224 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 SEL1L3Q68CR1 1132 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 TMEM207Q6UWW9 146 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 ZNF461Q8TAF7 563 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 PLD4Q96BZ4 506 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 UBXN10Q96LJ8 280 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 PPP1R36Q96LQ0 422 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 POMKQ9H5K3 350 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 GPAMQ9HCL2 828 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 VWA7Q9Y334 891 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 C2orf78A6NCI8 922 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 GOT2P00505 430 aaKnown RBP20.37■□□□□ 0.85
CLN3-230ENST00000568076 JUNP05412 331 aaKnown RBP20.37■□□□□ 0.85
CLN3-230ENST00000568076 LTA4HP09960 611 aaKnown RBP20.37■□□□□ 0.85
CLN3-230ENST00000568076 CCDC166P0CW27 439 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 CD1EP15812 388 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 KCNA5P22460 613 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 NAA25Q14CX7 972 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 FAM83EQ2M2I3 478 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 METTL21CQ5VZV1 264 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 CCNYL1Q8N7R7 359 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 SHKBP1Q8TBC3 707 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 MYRFLQ96LU7 910 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 PSKH2Q96QS6 385 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 RETREG1Q9H6L5 497 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 UBA2Q9UBT2 640 aaPredicted RBP20.37■□□□□ 0.85
CLN3-230ENST00000568076 SLC7A8Q9UHI5 535 aa20.37■□□□□ 0.85
CLN3-230ENST00000568076 AGO1Q9UL18 857 aaKnown RBP20.37■□□□□ 0.85
CLN3-230ENST00000568076 A0A088AWK7 358 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 NEMP1O14524 444 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 KDELR3O43731 214 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 CLDN11O75508 207 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 RPSAP08865 295 aaKnown RBP20.36■□□□□ 0.85
CLN3-230ENST00000568076 ATP5F1P24539 256 aaPredicted RBP20.36■□□□□ 0.85
CLN3-230ENST00000568076 EPHA3P29320 983 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 KPNA2P52292 529 aaKnown RBP20.36■□□□□ 0.85
CLN3-230ENST00000568076 OXCT1P55809 520 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 PFKPQ01813 784 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 NSUN2Q08J23 767 aaKnown RBP eCLIP20.36■□□□□ 0.85
CLN3-230ENST00000568076 PEX6Q13608 980 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 SEMA3AQ14563 771 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 SLC39A5Q6ZMH5 540 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 TRIM67Q6ZTA4 783 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 BRSK1Q8TDC3 778 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 EXOC2Q96KP1 924 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 LBHD1Q9BQE6 289 aaPredicted RBP20.36■□□□□ 0.85
CLN3-230ENST00000568076 NUF2Q9BZD4 464 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 CYP4F11Q9HBI6 524 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 TRPM5Q9NZQ8 1165 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 SEPT3Q9UH03 358 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 YIPF1Q9Y548 306 aa20.36■□□□□ 0.85
CLN3-230ENST00000568076 CCDC162PA2VCL2 907 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 NPHS1O60500 1241 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms