RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ATP13A3Q9H7F0 1226 aa14.98□□□□□ -0.01
CLN3-213ENST00000565047 SP110Q9HB58 689 aa14.98□□□□□ -0.01
CLN3-213ENST00000565047 RCOR3Q9P2K3 495 aaPredicted RBP14.98□□□□□ -0.01
CLN3-213ENST00000565047 GPSM3Q9Y4H4 160 aa14.98□□□□□ -0.01
CLN3-213ENST00000565047 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.98□□□□□ -0.01
CLN3-213ENST00000565047 TDRD6O60522 2096 aaKnown RBP14.97□□□□□ -0.01
CLN3-213ENST00000565047 ANKRD11Q6UB99 2663 aaPredicted RBP14.97□□□□□ -0.01
CLN3-213ENST00000565047 TTC24A2A3L6 582 aaPredicted RBP14.97□□□□□ -0.01
CLN3-213ENST00000565047 NEMP2A6NFY4 417 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 MYO1FO00160 1098 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 AQP9O43315 295 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 JUNDP17535 347 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 SERPINA4P29622 427 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 ARL4AP40617 200 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 PEX5P50542 639 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 SCNN1BP51168 640 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 AP1S1P61966 158 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 SEMG2Q02383 582 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 CYP4F3Q08477 520 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 TARDBPQ13148 414 aaKnown RBP eCLIP14.97□□□□□ -0.01
CLN3-213ENST00000565047 MMRN1Q13201 1228 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 IHHQ14623 411 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 LRRC14Q15048 493 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 NFKBIBQ15653 356 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 KCTD16Q68DU8 428 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 SPECC1LQ69YQ0 1117 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 LIPIQ6XZB0 460 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 MACC1Q6ZN28 852 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 RBFAQ8N0V3 343 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 TEX26Q8N6G2 289 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 PCDH19Q8TAB3 1148 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 MGME1Q9BQP7 344 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 LRRC61Q9BV99 259 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 DUSP23Q9BVJ7 150 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 CLPBQ9H078 707 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 SEPT3Q9UH03 358 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 RALYQ9UKM9 306 aaKnown RBP14.97□□□□□ -0.01
CLN3-213ENST00000565047 KNTC1P50748 2209 aa14.97□□□□□ -0.01
CLN3-213ENST00000565047 GOLGA4Q13439 2230 aaKnown RBP14.97□□□□□ -0.01
CLN3-213ENST00000565047 SSU72P8A0A1W2PR75 194 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 TPP1O14773 563 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 LZTS3O60299 673 aaPredicted RBP14.96□□□□□ -0.01
CLN3-213ENST00000565047 PROSCO94903 275 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 APC2O95996 2303 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 JUPP14923 745 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 RENBPP51606 427 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 TAS2R40P59535 323 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 E2F1Q01094 437 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 BCL2L1Q07817 233 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 DPYSL3Q14195 570 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 PTK2BQ14289 1009 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 INPP5AQ14642 412 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 RTP5Q14D33 572 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 ERAP2Q6P179 960 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 DPPA4Q7L190 304 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 VSTM4Q8IW00 320 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 COL27A1Q8IZC6 1860 aaPredicted RBP14.96□□□□□ -0.01
CLN3-213ENST00000565047 PELI3Q8N2H9 469 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 PLA2G15Q8NCC3 412 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 OR8K1Q8NGG5 319 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 ZNF564Q8TBZ8 553 aaPredicted RBP14.96□□□□□ -0.01
CLN3-213ENST00000565047 FAF2Q96CS3 445 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 NUDCD1Q96RS6 583 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 CHP1Q99653 195 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 BOCQ9BWV1 1114 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 C1QTNF7Q9BXJ2 289 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 USP29Q9HBJ7 922 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 NOD2Q9HC29 1040 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 UVRAGQ9P2Y5 699 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 SALL4Q9UJQ4 1053 aa14.96□□□□□ -0.01
CLN3-213ENST00000565047 ITPR1Q14643 2758 aa14.96□□□□□ -0.02
CLN3-213ENST00000565047 SOCS5O75159 536 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 GP1BAP07359 652 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 TRIM23P36406 574 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 HSPA9P38646 679 aaKnown RBP14.95□□□□□ -0.02
CLN3-213ENST00000565047 CDH6P55285 790 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 GALNT2Q10471 571 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 PAFAH1B3Q15102 231 aaKnown RBP14.95□□□□□ -0.02
CLN3-213ENST00000565047 NCBP2-AS2Q69YL0 99 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 ZCCHC8Q6NZY4 707 aaKnown RBP14.95□□□□□ -0.02
CLN3-213ENST00000565047 PHACTR4Q8IZ21 702 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 BTN2A2Q8WVV5 523 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 MAML1Q92585 1016 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 FATE1Q969F0 183 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 APOOQ9BUR5 198 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 NRSN2Q9GZP1 204 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 RAXQ9Y2V3 346 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 PPIL1Q9Y3C6 166 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 PCDHGC4Q9Y5F7 938 aa14.95□□□□□ -0.02
CLN3-213ENST00000565047 NBEAQ8NFP9 2946 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 ANKRD36A6QL64 1941 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 MYLKQ15746 1914 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.94□□□□□ -0.02
CLN3-213ENST00000565047 EME2A4GXA9 379 aaPredicted RBP14.94□□□□□ -0.02
CLN3-213ENST00000565047 TMEM110-MUSTN1A8MSY1 372 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 LMO7DNF2Z398 122 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 H3BM21 787 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 YY2O15391 372 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 MFSD11O43934 449 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 OPA1O60313 960 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms