RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 MMP12P39900 470 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 POLR2LP62875 67 aaKnown RBP14.43□□□□□ -0.1
USP3-205ENST00000557884 RPS21P63220 83 aaKnown RBP14.43□□□□□ -0.1
USP3-205ENST00000557884 SNX1Q13596 522 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 FGL2Q14314 439 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 PTPRRQ15256 657 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 PCSK7Q16549 785 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 LONRF2Q1L5Z9 754 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 TMEM259Q4ZIN3 620 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 SETMARQ53H47 684 aaPredicted RBP14.43□□□□□ -0.1
USP3-205ENST00000557884 TRIM61Q5EBN2 209 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 PEAR1Q5VY43 1037 aaPredicted RBP14.43□□□□□ -0.1
USP3-205ENST00000557884 KIAA1161Q6NSJ0 714 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 NEK5Q6P3R8 708 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 PID1Q7Z2X4 250 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 KDELC2Q7Z4H8 507 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 FAM71DQ8N9W8 422 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 SLC35B2Q8TB61 432 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 CCDC110Q8TBZ0 833 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 IMP4Q96G21 291 aaKnown RBP14.43□□□□□ -0.1
USP3-205ENST00000557884 MS4A14Q96JA4 679 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 SERAC1Q96JX3 654 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 SMIM14Q96QK8 99 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 WDR24Q96S15 920 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 FERMT1Q9BQL6 677 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 TDRD1Q9BXT4 1180 aaKnown RBP14.43□□□□□ -0.1
USP3-205ENST00000557884 USP29Q9HBJ7 922 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 TM9SF3Q9HD45 589 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 B4GALT6Q9UBX8 382 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 CA5BQ9Y2D0 317 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 PLXND1Q9Y4D7 1925 aa14.43□□□□□ -0.1
USP3-205ENST00000557884 GVINP1Q7Z2Y8 2422 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 A0A1B0GTW7 788 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 GOLGA8CPA6NN73 597 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 LIASO43766 372 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 LRP3O75074 770 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 PMPCBO75439 489 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 STK10O94804 968 aaKnown RBP14.42□□□□□ -0.1
USP3-205ENST00000557884 MT-CYBP00156 380 aaPredicted RBP14.42□□□□□ -0.1
USP3-205ENST00000557884 ZNF806P0C7X5 589 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 CA4P22748 312 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 HOXD12P35452 270 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 DPP6P42658 865 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 LIG3P49916 1009 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 SUOXP51687 545 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 EPHB1P54762 984 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 ELP6Q0PNE2 266 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 SIX1Q15475 284 aaPredicted RBP14.42□□□□□ -0.1
USP3-205ENST00000557884 CSRP2Q16527 193 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 DUOXA1Q1HG43 343 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 TMEM52BQ4KMG9 183 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 KIAA2013Q8IYS2 634 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 LPCAT1Q8NF37 534 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 C1orf216Q8TAB5 229 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 CEP76Q8TAP6 659 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 PIH1D2Q8WWB5 315 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 VAT1Q99536 393 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 TMEM121Q9BTD3 319 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 SLC17A9Q9BYT1 436 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 PCDH9Q9HC56 1237 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 AASDHPPTQ9NRN7 309 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 SMARCAL1Q9NZC9 954 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 SUSD2Q9UGT4 822 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 RSPH14Q9UHP6 348 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 TRHDEQ9UKU6 1024 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 PHTF1Q9UMS5 762 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 COQ6Q9Y2Z9 468 aa14.42□□□□□ -0.1
USP3-205ENST00000557884 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.42□□□□□ -0.1
USP3-205ENST00000557884 A0A0U1RQS6 177 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 A0A1W2PQ67 120 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 KHNYNO15037 678 aaKnown RBP14.41□□□□□ -0.1
USP3-205ENST00000557884 FZD6O60353 706 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 PAK4O96013 591 aaPredicted RBP14.41□□□□□ -0.1
USP3-205ENST00000557884 PRLP01236 227 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 ALPIP09923 528 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 CSNK1EP49674 416 aaKnown RBP14.41□□□□□ -0.1
USP3-205ENST00000557884 GDF10P55107 478 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 IRX4P78413 519 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 RALGDSQ12967 914 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 SGCGQ13326 291 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 GALNT3Q14435 633 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 ANKRD20A2Q5SQ80 823 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 ANKRD20A1Q5TYW2 823 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 ANKRD20A3Q5VUR7 823 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 NAPEPLDQ6IQ20 393 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 PRR23CQ6ZRP0 262 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 C12orf50Q8NA57 414 aaPredicted RBP14.41□□□□□ -0.1
USP3-205ENST00000557884 COG1Q8WTW3 980 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 OXNAD1Q96HP4 312 aaPredicted RBP14.41□□□□□ -0.1
USP3-205ENST00000557884 PBKQ96KB5 322 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 SPATA13Q96N96 652 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 OSBPL9Q96SU4 736 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 NUSAP1Q9BXS6 441 aaKnown RBP14.41□□□□□ -0.1
USP3-205ENST00000557884 GBA3Q9H227 469 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 FAM153AQ9UHL3 310 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 SNX12Q9UMY4 172 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 THADAQ6YHU6 1953 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 SHROOM3Q8TF72 1996 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 GON4LQ3T8J9 2241 aa14.41□□□□□ -0.1
USP3-205ENST00000557884 CFAP54Q96N23 3096 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms