RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 PAGE4O60829 102 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 TFP02787 698 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 EIF2S1P05198 315 aaKnown RBP5.12□□□□□ -1.59
LIMA1-205ENST00000550592 PRR35P0CG20 571 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 ENO3P13929 434 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-205ENST00000550592 CDH2P19022 906 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-205ENST00000550592 EDN2P20800 178 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 NFKBIAP25963 317 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 RFC1P35251 1148 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-205ENST00000550592 GNAQP50148 359 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 SSBP2P81877 361 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-205ENST00000550592 SRSF4Q08170 494 aaKnown RBP5.12□□□□□ -1.59
LIMA1-205ENST00000550592 MTX1Q13505 466 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 PLEKHO1Q53GL0 409 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-205ENST00000550592 NCEH1Q6PIU2 408 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 GPSM1Q86YR5 675 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 FAM217AQ8IXS0 508 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 KIAA2013Q8IYS2 634 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 TMEM116Q8NCL8 245 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 PSPC1Q8WXF1 523 aaKnown RBP5.12□□□□□ -1.59
LIMA1-205ENST00000550592 ARHGEF2Q92974 986 aaKnown RBP5.12□□□□□ -1.59
LIMA1-205ENST00000550592 RNF183Q96D59 192 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 RSRC1Q96IZ7 334 aaKnown RBP5.12□□□□□ -1.59
LIMA1-205ENST00000550592 ZFYVE19Q96K21 471 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 TASP1Q9H6P5 420 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 MVB12BQ9H7P6 319 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 SCPEP1Q9HB40 452 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 NSMCE4AQ9NXX6 385 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 EHD2Q9NZN4 543 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 HAO1Q9UJM8 370 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 GPR34Q9UPC5 381 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 CARD8Q9Y2G2 431 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 SPAG9O60271 1321 aaKnown RBP5.12□□□□□ -1.59
LIMA1-205ENST00000550592 NINLQ9Y2I6 1382 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 ABCC3O15438 1527 aa5.12□□□□□ -1.59
LIMA1-205ENST00000550592 KIDINS220Q9ULH0 1771 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 ARHGEF17Q96PE2 2063 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-205ENST00000550592 A0A1W2PPC1 479 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 A0A1W2PRG0 241 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 GAGE12JA6NER3 117 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 KLRF2D3W0D1 207 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 USP17L23D6RBM5 183 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 IFNL4K9M1U5 179 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 GTPBP1O00178 669 aaKnown RBP5.11□□□□□ -1.59
LIMA1-205ENST00000550592 ADAM10O14672 748 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 LIASO43766 372 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 IFNA2P01563 188 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 MMP3P08254 477 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 HOXB5P09067 269 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 CHRNB1P11230 501 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 PCNAP12004 261 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 ALOX12P18054 663 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 SRD5A1P18405 259 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 CD38P28907 300 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 TM4SF1P30408 202 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 PBX3P40426 434 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 CXCR3P49682 368 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 GAD2Q05329 585 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 SRSF1Q07955 248 aaKnown RBP eCLIP5.11□□□□□ -1.59
LIMA1-205ENST00000550592 PPP2R5BQ15173 497 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 SMN1Q16637 294 aaKnown RBP5.11□□□□□ -1.59
LIMA1-205ENST00000550592 DPCR1Q3MIW9 517 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 TMEM71Q6P5X7 295 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 SLC2A7Q6PXP3 512 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 CYP20A1Q6UW02 462 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 CCDC129Q6ZRS4 1044 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 IKBIPQ70UQ0 350 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.11□□□□□ -1.59
LIMA1-205ENST00000550592 DHX40Q8IX18 779 aaKnown RBP5.11□□□□□ -1.59
LIMA1-205ENST00000550592 RPAP2Q8IXW5 612 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-205ENST00000550592 RBFAQ8N0V3 343 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 HORMAD2Q8N7B1 307 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 PDILTQ8N807 584 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 PRSS3P2Q8NHM4 247 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 BICD2Q8TD16 824 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 PIGOQ8TEQ8 1089 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 TMEM174Q8WUU8 243 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 SNAPC3Q92966 411 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 SMARCE1Q969G3 411 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 YME1L1Q96TA2 773 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 CDT1Q9H211 546 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 MAP6D1Q9H9H5 199 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 CTNNAL1Q9UBT7 734 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 MKLN1Q9UL63 735 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 CORO1CQ9ULV4 474 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-205ENST00000550592 PCDHA12Q9UN75 941 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 FAM96BQ9Y3D0 163 aa5.11□□□□□ -1.59
LIMA1-205ENST00000550592 SCAF11Q99590 1463 aaKnown RBP5.11□□□□□ -1.59
LIMA1-205ENST00000550592 FAM237BA0A1B0GVD1 139 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 A0A1W2PQF6 199 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 NPIPB11E5RHQ5 1161 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 RTEL1-TNFRSF6BF6WH68 1400 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 STMND1H3BQB6 276 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 UTYO14607 1347 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 MDM4O15151 490 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 ATRNO75882 1429 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 MT-CYBP00156 380 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-205ENST00000550592 KLKB1P03952 638 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 PZPP20742 1482 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 CDAP32320 146 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms