RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 CHRNA4P43681 627 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 FNTAP49354 379 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 NEK3P51956 506 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 LMNB2Q03252 620 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 DHX34Q14147 1143 aaKnown RBP13.08□□□□□ -0.32
CCDC42-202ENST00000539522 SLC14A2Q15849 920 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 USP39Q53GS9 565 aaKnown RBP13.08□□□□□ -0.32
CCDC42-202ENST00000539522 PMS2CLQ68D20 193 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 DENND5AQ6IQ26 1287 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 C8orf74Q6P047 294 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 TMEFF1Q8IYR6 380 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 CBARPQ8N350 705 aaPredicted RBP13.08□□□□□ -0.32
CCDC42-202ENST00000539522 BBS5Q8N3I7 341 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 TAB3Q8N5C8 712 aaPredicted RBP13.08□□□□□ -0.32
CCDC42-202ENST00000539522 SUMF1Q8NBK3 374 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 FUBP1Q96AE4 644 aaKnown RBP13.08□□□□□ -0.32
CCDC42-202ENST00000539522 EID2BQ96D98 161 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 ZC3H10Q96K80 434 aaKnown RBP13.08□□□□□ -0.32
CCDC42-202ENST00000539522 MCCC1Q96RQ3 725 aaPredicted RBP13.08□□□□□ -0.32
CCDC42-202ENST00000539522 OMDQ99983 421 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 GPR174Q9BXC1 333 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 PARD6BQ9BYG5 372 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 EPC1Q9H2F5 836 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 PCDH12Q9NPG4 1184 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 RSPH14Q9UHP6 348 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 ZNF148Q9UQR1 794 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 FARP1Q9Y4F1 1045 aaPredicted RBP13.08□□□□□ -0.32
CCDC42-202ENST00000539522 TP53BP1Q12888 1972 aaPredicted RBP13.07□□□□□ -0.32
CCDC42-202ENST00000539522 CFAP69A5D8W1 941 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 NPIPB15A6NHN6 443 aaPredicted RBP13.07□□□□□ -0.32
CCDC42-202ENST00000539522 UPK3BL1B0FP48 263 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 UPK3BL2E5RIL1 263 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 SLC7A4O43246 635 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 OPHN1O60890 802 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 PMPCBO75439 489 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 SEMA4FO95754 770 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 SERPINF2P08697 491 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 ALPIP09923 528 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 ACADMP11310 421 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 CTPS1P17812 591 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 STIP1P31948 543 aaKnown RBP13.07□□□□□ -0.32
CCDC42-202ENST00000539522 MMP12P39900 470 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 NBL1P41271 181 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 MAPK8P45983 427 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 WNT3AP56704 352 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 GALNT3Q14435 633 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 GRM3Q14832 879 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 ELF2Q15723 593 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 QPCTQ16769 361 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 P3H1Q32P28 736 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 TTC31Q49AM3 519 aaPredicted RBP13.07□□□□□ -0.32
CCDC42-202ENST00000539522 TMEM259Q4ZIN3 620 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 SEL1L3Q68CR1 1132 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 CCDC137Q6PK04 289 aaKnown RBP13.07□□□□□ -0.32
CCDC42-202ENST00000539522 KDM7AQ6ZMT4 941 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 SYDE1Q6ZW31 735 aaPredicted RBP13.07□□□□□ -0.32
CCDC42-202ENST00000539522 TSPAN33Q86UF1 283 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 IFT20Q8IY31 132 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 OR14C36Q8NHC7 312 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 C1orf216Q8TAB5 229 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 GRK7Q8WTQ7 553 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 ANKZF1Q9H8Y5 726 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 ETNK1Q9HBU6 452 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 PCDH9Q9HC56 1237 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 SPO11Q9Y5K1 396 aa13.07□□□□□ -0.32
CCDC42-202ENST00000539522 ZNF106Q9H2Y7 1883 aaKnown RBP13.06□□□□□ -0.32
CCDC42-202ENST00000539522 TCRBV7S3A2A0A539 114 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 RAD51CO43502 376 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 LATO43561 262 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 AP1G1O43747 822 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 ZNF189O75820 626 aaPredicted RBP13.06□□□□□ -0.32
CCDC42-202ENST00000539522 CPP00450 1065 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 AGTP01019 485 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 CES1P23141 567 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 OXTRP30559 389 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 HNF1BP35680 557 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 MRPS25P82663 173 aaKnown RBP13.06□□□□□ -0.32
CCDC42-202ENST00000539522 DR1Q01658 176 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 RAD51Q06609 339 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 SPARCL1Q14515 664 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 TRIP13Q15645 432 aaPredicted RBP13.06□□□□□ -0.32
CCDC42-202ENST00000539522 PCSK7Q16549 785 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 LPAL2Q16609 132 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 PARP6Q2NL67 630 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 ZNF284Q2VY69 593 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 TMEM52BQ4KMG9 183 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 SYCP2LQ5T4T6 812 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 WDR93Q6P2C0 686 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 BRAT1Q6PJG6 821 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 RANBP10Q6VN20 620 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 RFLNAQ6ZTI6 216 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 MICALCLQ6ZW33 695 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 KDELC2Q7Z4H8 507 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 TTC7BQ86TV6 843 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 PDCD6IPQ8WUM4 868 aaKnown RBP13.06□□□□□ -0.32
CCDC42-202ENST00000539522 SLCO2A1Q92959 643 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 BIRC7Q96CA5 298 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 PPP1R16AQ96I34 528 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 PRRX2Q99811 253 aa13.06□□□□□ -0.32
CCDC42-202ENST00000539522 BTBD1Q9H0C5 482 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms