RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 SLC35F5Q8WV83 523 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 TSACCQ96A04 125 aaPredicted RBP8.32□□□□□ -1.08
CD44-232ENST00000531118 TMX3Q96JJ7 454 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 GRIP2Q9C0E4 1043 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 MBNL1Q9NR56 388 aaKnown RBP8.32□□□□□ -1.08
CD44-232ENST00000531118 ZNF358Q9NW07 568 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 LRIT1Q9P2V4 623 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 KLQ9UEF7 1012 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 PILRAQ9UKJ1 303 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 SMC3Q9UQE7 1217 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 TBC1D30Q9Y2I9 924 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 KCNMB2Q9Y691 235 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 PVALEFA0A1B0GWK0 134 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 PDXKO00764 312 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 SART1O43290 800 aaKnown RBP8.31□□□□□ -1.08
CD44-232ENST00000531118 CLDN11O75508 207 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 ZNF821O75541 412 aaPredicted RBP8.31□□□□□ -1.08
CD44-232ENST00000531118 ENDOD1O94919 500 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 TRUB2O95900 331 aaKnown RBP8.31□□□□□ -1.08
CD44-232ENST00000531118 THRAP10827 490 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 KRT13P13646 458 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 CSF2RBP32927 897 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 ENPEPQ07075 957 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 STK4Q13043 487 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 TRA2AQ13595 282 aaKnown RBP eCLIP8.31□□□□□ -1.08
CD44-232ENST00000531118 CUL2Q13617 745 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 CUL4BQ13620 913 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 ARHGEF7Q14155 803 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 ELOAQ14241 798 aaKnown RBP8.31□□□□□ -1.08
CD44-232ENST00000531118 NAA30Q147X3 362 aaPredicted RBP8.31□□□□□ -1.08
CD44-232ENST00000531118 CLPPQ16740 277 aaPredicted RBP8.31□□□□□ -1.08
CD44-232ENST00000531118 EDRF1Q3B7T1 1238 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 AMZ1Q400G9 498 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 PRR30Q53SZ7 412 aaPredicted RBP8.31□□□□□ -1.08
CD44-232ENST00000531118 ANKS6Q68DC2 871 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 SPECC1LQ69YQ0 1117 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 BEND5Q7L4P6 421 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 RD3Q7Z3Z2 195 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 FAM186BQ8IYM0 893 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 PCDH20Q8N6Y1 951 aaKnown RBP8.31□□□□□ -1.08
CD44-232ENST00000531118 AGBL5Q8NDL9 886 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 FBXL13Q8NEE6 735 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 TFAP2BQ92481 460 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 RAB7BQ96AH8 199 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 HSFY1Q96LI6 401 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 USP28Q96RU2 1077 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 RBM15Q96T37 977 aaKnown RBP eCLIP8.31□□□□□ -1.08
CD44-232ENST00000531118 HEPHQ9BQS7 1158 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 C1QTNF7Q9BXJ2 289 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 SLC29A3Q9BZD2 475 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 ZDHHC6Q9H6R6 413 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 FAM204AQ9H8W3 233 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 SLC39A1Q9NY26 324 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 VANGL2Q9ULK5 521 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 MRPS18BQ9Y676 258 aaKnown RBP8.31□□□□□ -1.08
CD44-232ENST00000531118 OAS3Q9Y6K5 1087 aaKnown RBP8.31□□□□□ -1.08
CD44-232ENST00000531118 PCSK5Q92824 1860 aa8.31□□□□□ -1.08
CD44-232ENST00000531118 PKDREJQ9NTG1 2253 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.3□□□□□ -1.08
CD44-232ENST00000531118 FIGNL2A6NMB9 653 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 C16orf96A6NNT2 1141 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 B4E171 279 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 CALUO43852 315 aaPredicted RBP8.3□□□□□ -1.08
CD44-232ENST00000531118 KLRC4O43908 158 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 ADCY5O95622 1261 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 NR2F2P24468 414 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 BRD2P25440 801 aaKnown RBP8.3□□□□□ -1.08
CD44-232ENST00000531118 MAP4P27816 1152 aaKnown RBP8.3□□□□□ -1.08
CD44-232ENST00000531118 GTF2H1P32780 548 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 CSTF2P33240 577 aaKnown RBP eCLIP8.3□□□□□ -1.08
CD44-232ENST00000531118 TSPAN7P41732 249 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 SERPINH1P50454 418 aaKnown RBP8.3□□□□□ -1.08
CD44-232ENST00000531118 PEX5P50542 639 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 LIMK2P53671 638 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 PMS2P54278 862 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 CDH4P55283 916 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 MAZP56270 477 aaKnown RBP8.3□□□□□ -1.08
CD44-232ENST00000531118 OR1D5P58170 312 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 SRP54P61011 504 aaKnown RBP8.3□□□□□ -1.08
CD44-232ENST00000531118 YWHAEP62258 255 aaKnown RBP8.3□□□□□ -1.08
CD44-232ENST00000531118 ABHD18Q0P651 414 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 EIF4EBP2Q13542 120 aaPredicted RBP8.3□□□□□ -1.08
CD44-232ENST00000531118 AUHQ13825 339 aaKnown RBP8.3□□□□□ -1.08
CD44-232ENST00000531118 NR1D2Q14995 579 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 SLC39A14Q15043 492 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 EIF2S3LQ2VIR3 472 aaKnown RBP8.3□□□□□ -1.08
CD44-232ENST00000531118 LRRC73Q5JTD7 316 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 DCAF12Q5T6F0 453 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 OGFOD3Q6PK18 319 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 ENPP7Q6UWV6 458 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 TIPARPQ7Z3E1 657 aaKnown RBP8.3□□□□□ -1.08
CD44-232ENST00000531118 ZNF438Q7Z4V0 828 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 FAM129CQ86XR2 697 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 ANKMY2Q8IV38 441 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 NRSN1Q8IZ57 195 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 IQUBQ8NA54 791 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.3□□□□□ -1.08
CD44-232ENST00000531118 OR6K2Q8NGY2 324 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 ARHGEF26Q96DR7 871 aa8.3□□□□□ -1.08
CD44-232ENST00000531118 RTP4Q96DX8 246 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms