RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 ENO4A6NNW6 628 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 SEPT4O43236 478 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 ASGR1P07306 291 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 INHBEP58166 350 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 GRM2Q14416 872 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 FOXB2Q5VYV0 432 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 ZNF280DQ6N043 979 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 GLB1LQ6UWU2 654 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 MAP3K13O43283 966 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 MMP2P08253 660 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 HAPLN1P10915 354 aaPredicted RBP21.35■■□□□ 1.01
VPS28-205ENST00000526204 PKNOX1P55347 436 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 PRAMEP78395 509 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 LAMB3Q13751 1172 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 SQLEQ14534 574 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 FAM26DQ5JW98 314 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 ACBD5Q5T8D3 534 aaPredicted RBP21.35■■□□□ 1.01
VPS28-205ENST00000526204 CUZD1Q86UP6 607 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 OR6P1Q8NGX9 317 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 TADA1Q96BN2 335 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 BTN2A3PQ96KV6 586 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 Q9H521 79 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 SUDS3Q9H7L9 328 aaPredicted RBP21.35■■□□□ 1.01
VPS28-205ENST00000526204 CYP4F12Q9HCS2 524 aa21.35■■□□□ 1.01
VPS28-205ENST00000526204 PAPOLBQ9NRJ5 636 aaKnown RBP21.35■■□□□ 1.01
VPS28-205ENST00000526204 NYNRINQ9P2P1 1898 aaKnown RBP21.35■■□□□ 1.01
VPS28-205ENST00000526204 ADAMTS4O75173 837 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 MAXP61244 160 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 MRPS22P82650 360 aaKnown RBP21.34■■□□□ 1.01
VPS28-205ENST00000526204 DSC2Q02487 901 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 FOLH1Q04609 750 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 SLC30A9Q6PML9 568 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 PTAR1Q7Z6K3 402 aaPredicted RBP21.34■■□□□ 1.01
VPS28-205ENST00000526204 BHLHE22Q8NFJ8 381 aaPredicted RBP21.34■■□□□ 1.01
VPS28-205ENST00000526204 ZNF483Q8TF39 744 aaPredicted RBP21.34■■□□□ 1.01
VPS28-205ENST00000526204 USP13Q92995 863 aaPredicted RBP21.34■■□□□ 1.01
VPS28-205ENST00000526204 KLHL5Q96PQ7 755 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 CENPKQ9BS16 269 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 EPS15L1Q9UBC2 864 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 TDRD15B5MCY1 1934 aaKnown RBP21.34■■□□□ 1.01
VPS28-205ENST00000526204 TMEM189-UBE2V1I3L0A0 370 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 TRIM38O00635 465 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 UBDO15205 165 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 HOXB8P17481 243 aaPredicted RBP21.34■■□□□ 1.01
VPS28-205ENST00000526204 IMPDH1P20839 514 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 KCNA5P22460 613 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 DPP6P42658 865 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 PSMD8P48556 350 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 INHBCP55103 352 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 MS4A2Q01362 244 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 ADGRE1Q14246 886 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 PTK2BQ14289 1009 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 PDK3Q15120 406 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 KCNA10Q16322 511 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 DDR2Q16832 855 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 TRIB2Q92519 343 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 PEX13Q92968 403 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 HDAC10Q969S8 669 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 PSMG2Q969U7 264 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 NPAS2Q99743 824 aa21.34■■□□□ 1.01
VPS28-205ENST00000526204 LOC285095A0A1B0GVY8 99 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 DENRO43583 198 aaKnown RBP21.33■■□□□ 1.01
VPS28-205ENST00000526204 EOMESO95936 686 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 S1PR4O95977 384 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 IL10RBQ08334 325 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 DSC1Q08554 894 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 ALFQ53S48 1182 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 SIRPB2Q5JXA9 342 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 FAM45BPQ6NSW5 357 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 ZNF354CQ86Y25 554 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 ADCY4Q8NFM4 1077 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 FAM45AQ8TCE6 357 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 TMA16Q96EY4 203 aaKnown RBP21.33■■□□□ 1.01
VPS28-205ENST00000526204 DCUN1D1Q96GG9 259 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 OLA1Q9NTK5 396 aaKnown RBP21.33■■□□□ 1.01
VPS28-205ENST00000526204 HACD3Q9P035 362 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 GMIPQ9P107 970 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 NOD1Q9Y239 953 aa21.33■■□□□ 1.01
VPS28-205ENST00000526204 CAPN8A6NHC0 703 aa21.32■■□□□ 1
VPS28-205ENST00000526204 ACOT8O14734 319 aa21.32■■□□□ 1
VPS28-205ENST00000526204 AP1G1O43747 822 aa21.32■■□□□ 1
VPS28-205ENST00000526204 GPC4O75487 556 aa21.32■■□□□ 1
VPS28-205ENST00000526204 CNTN5O94779 1100 aa21.32■■□□□ 1
VPS28-205ENST00000526204 CTGFP29279 349 aa21.32■■□□□ 1
VPS28-205ENST00000526204 MAGEA11P43364 429 aa21.32■■□□□ 1
VPS28-205ENST00000526204 CHN2P52757 468 aa21.32■■□□□ 1
VPS28-205ENST00000526204 TRIP4Q15650 581 aaPredicted RBP21.32■■□□□ 1
VPS28-205ENST00000526204 PARP15Q460N3 678 aa21.32■■□□□ 1
VPS28-205ENST00000526204 SDHAF4Q5VUM1 108 aa21.32■■□□□ 1
VPS28-205ENST00000526204 L3HYPDHQ96EM0 354 aa21.32■■□□□ 1
VPS28-205ENST00000526204 IL37Q9NZH6 218 aa21.32■■□□□ 1
VPS28-205ENST00000526204 UXTQ9UBK9 157 aaPredicted RBP21.32■■□□□ 1
VPS28-205ENST00000526204 PCDHB5Q9Y5E4 795 aa21.32■■□□□ 1
VPS28-205ENST00000526204 CCDC189A1A4V9 331 aa21.32■■□□□ 1
VPS28-205ENST00000526204 PSMD12O00232 456 aaPredicted RBP21.32■■□□□ 1
VPS28-205ENST00000526204 WISP3O95389 354 aaPredicted RBP21.32■■□□□ 1
VPS28-205ENST00000526204 EFEMP1Q12805 493 aa21.32■■□□□ 1
VPS28-205ENST00000526204 ZNF280BQ86YH2 543 aa21.32■■□□□ 1
VPS28-205ENST00000526204 GALNT15Q8N3T1 639 aa21.32■■□□□ 1
VPS28-205ENST00000526204 ARRDC2Q8TBH0 407 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms