RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 GRIA4P48058 902 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 GEMP55040 296 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 NHLH1Q02575 133 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 WDR45BQ5MNZ6 344 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 SYCP2LQ5T4T6 812 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 HORMAD1Q86X24 394 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 SLC41A1Q8IVJ1 513 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 TMEFF1Q8IYR6 380 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 PAF1Q8N7H5 531 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 CCDC89Q8N998 374 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 SPATA22Q8NHS9 363 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 PDCD6IPQ8WUM4 868 aaKnown RBP20.88■□□□□ 0.93
CD44-222ENST00000526025 ASB12Q8WXK4 309 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 DNASE2BQ8WZ79 361 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 MAGOHBQ96A72 148 aaKnown RBP20.88■□□□□ 0.93
CD44-222ENST00000526025 SCRN2Q96FV2 425 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 OXNAD1Q96HP4 312 aaPredicted RBP20.88■□□□□ 0.93
CD44-222ENST00000526025 AP1M1Q9BXS5 423 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 FEZ2Q9UHY8 353 aaPredicted RBP20.88■□□□□ 0.93
CD44-222ENST00000526025 PCDHGA5Q9Y5G8 931 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 OTOGLQ3ZCN5 2332 aa20.88■□□□□ 0.93
CD44-222ENST00000526025 PI4KAP42356 2102 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 TBC1D3DA0A087WVF3 549 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 TBC1D3IA0A087WXS9 549 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 TBC1D3EA0A087X179 549 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 TBC1D3KA0A087X1G2 549 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 GOLGA6CA6NDK9 693 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 GOLGA6BA6NDN3 693 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 TBC1D3FA6NER0 549 aaPredicted RBP20.87■□□□□ 0.93
CD44-222ENST00000526025 TBC1D3LB9A6J9 549 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 MT-CYBP00156 380 aaPredicted RBP20.87■□□□□ 0.93
CD44-222ENST00000526025 TBC1D3HP0C7X1 549 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 GOLGA6DP0CG33 693 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 PSMB4P28070 264 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 RPS21P63220 83 aaKnown RBP20.87■□□□□ 0.93
CD44-222ENST00000526025 CDK18Q07002 472 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 TMEM259Q4ZIN3 620 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 PEAR1Q5VY43 1037 aaPredicted RBP20.87■□□□□ 0.93
CD44-222ENST00000526025 LYSMD4Q5XG99 296 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 TBC1D3GQ6DHY5 549 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 TBC1D3CQ6IPX1 549 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 USP45Q70EL2 814 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 DPPA4Q7L190 304 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 TBC1D3Q8IZP1 549 aaPredicted RBP20.87■□□□□ 0.93
CD44-222ENST00000526025 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.87■□□□□ 0.93
CD44-222ENST00000526025 HSPA12BQ96MM6 686 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 LYSMD1Q96S90 227 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 GORASP1Q9BQQ3 440 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 FAM86C1Q9NVL1 165 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 GOLGA6AQ9NYA3 693 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 SMARCAL1Q9NZC9 954 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 PAK5Q9P286 719 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 CHKBQ9Y259 395 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 RALGAPA1Q6GYQ0 2036 aa20.87■□□□□ 0.93
CD44-222ENST00000526025 GPR179Q6PRD1 2367 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 CACNA1EQ15878 2313 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 A0A0J9YYE9 177 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 LOC285095A0A1B0GVY8 99 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 ANKRD66B4E2M5 251 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 CCDC188H7C350 402 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 NEMP1O14524 444 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 RNGTTO60942 597 aaKnown RBP20.86■□□□□ 0.93
CD44-222ENST00000526025 EPN2O95208 641 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 NDST3O95803 873 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 TRBC1P01850 177 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 PDHA1P08559 390 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 CYP2A6P11509 494 aaPredicted RBP20.86■□□□□ 0.93
CD44-222ENST00000526025 FDFT1P37268 417 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 COILP38432 576 aaPredicted RBP20.86■□□□□ 0.93
CD44-222ENST00000526025 WNT3AP56704 352 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 RAVER1Q8IY67 606 aaKnown RBP20.86■□□□□ 0.93
CD44-222ENST00000526025 GRK7Q8WTQ7 553 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 BIRC7Q96CA5 298 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 LRRC45Q96CN5 670 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 IFT43Q96FT9 208 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 CAPZA3Q96KX2 299 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 MRGPRX2Q96LB1 330 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 RUNDC3BQ96NL0 473 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 SRPK1Q96SB4 655 aaKnown RBP20.86■□□□□ 0.93
CD44-222ENST00000526025 DMTF1Q9Y222 760 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 PLXNA2O75051 1894 aa20.86■□□□□ 0.93
CD44-222ENST00000526025 VPS13AQ96RL7 3174 aa20.85■□□□□ 0.93
CD44-222ENST00000526025 A0A1W2PQU0 124 aa20.85■□□□□ 0.93
CD44-222ENST00000526025 CAPN8A6NHC0 703 aa20.85■□□□□ 0.93
CD44-222ENST00000526025 FAM47DPA6NHR8 397 aa20.85■□□□□ 0.93
CD44-222ENST00000526025 ERI2A8K979 691 aaKnown RBP20.85■□□□□ 0.93
CD44-222ENST00000526025 MEI4A8MW99 385 aa20.85■□□□□ 0.93
CD44-222ENST00000526025 PSMD3O43242 534 aa20.85■□□□□ 0.93
CD44-222ENST00000526025 PMPCBO75439 489 aa20.85■□□□□ 0.93
CD44-222ENST00000526025 PCDH8O95206 1070 aa20.85■□□□□ 0.93
CD44-222ENST00000526025 IFNB1P01574 187 aa20.85■□□□□ 0.93
CD44-222ENST00000526025 LMNAP02545 664 aaKnown RBP20.85■□□□□ 0.93
CD44-222ENST00000526025 CD27P26842 260 aa20.85■□□□□ 0.93
CD44-222ENST00000526025 VIPR1P32241 457 aa20.85■□□□□ 0.93
CD44-222ENST00000526025 PTGER3P43115 390 aa20.85■□□□□ 0.93
CD44-222ENST00000526025 TNNT3P45378 269 aaPredicted RBP20.85■□□□□ 0.93
CD44-222ENST00000526025 DHPSP49366 369 aaPredicted RBP20.85■□□□□ 0.93
CD44-222ENST00000526025 EPHB1P54762 984 aa20.85■□□□□ 0.93
CD44-222ENST00000526025 PPP2CBP62714 309 aa20.85■□□□□ 0.93
CD44-222ENST00000526025 PPP2CAP67775 309 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms