RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 PRKAA2P54646 552 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 IRF9Q00978 393 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 POU5F1Q01860 360 aaKnown RBP11.77□□□□□ -0.53
SYNPO-204ENST00000519664 FOLH1Q04609 750 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 ZC3H12BQ5HYM0 836 aaKnown RBP11.77□□□□□ -0.53
SYNPO-204ENST00000519664 CUZD1Q86UP6 607 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 MON1AQ86VX9 555 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 FSTL5Q8N475 847 aaPredicted RBP11.77□□□□□ -0.53
SYNPO-204ENST00000519664 DHRSXQ8N5I4 330 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 OR4K2Q8NGD2 314 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 OR9Q1Q8NGQ5 310 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 C7orf26Q96N11 449 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 MLPHQ9BV36 600 aaPredicted RBP11.77□□□□□ -0.53
SYNPO-204ENST00000519664 NDEL1Q9GZM8 345 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 OSGEPL1Q9H4B0 414 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 RPL26L1Q9UNX3 145 aaKnown RBP11.77□□□□□ -0.53
SYNPO-204ENST00000519664 SLC12A4Q9UP95 1085 aa11.77□□□□□ -0.53
SYNPO-204ENST00000519664 F8W810 466 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 GMPRP36959 345 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 DAOAP59103 153 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 SMAD3P84022 425 aaKnown RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 SPRED3Q2MJR0 410 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 B3GNT6Q6ZMB0 384 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 CROCCP3Q8IVE0 287 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 RP9Q8TA86 221 aaKnown RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 TPD52L3Q96J77 140 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 HNRNPABQ99729 332 aaKnown RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 CIB1Q99828 191 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 DGCR6LQ9BY27 220 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 NKX1-2Q9UD57 310 aaPredicted RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 SH3GLB1Q9Y371 365 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 PCDHGC4Q9Y5F7 938 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 ARL5CA6NH57 179 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 STK25O00506 426 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 CD3EAPO15446 510 aaKnown RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 RGS5O15539 181 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 HNRNPRO43390 633 aaKnown RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 TIPRLO75663 272 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 FGFR1P11362 822 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 IMPDH2P12268 514 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 MLNP12872 115 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 TRPC1P48995 793 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 LIMK2P53671 638 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 PITX1P78337 314 aaPredicted RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 FAM110CQ1W6H9 321 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 ZNF284Q2VY69 593 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 TRIM16LQ309B1 348 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 FAM98BQ52LJ0 330 aaKnown RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 CNSTQ6PJW8 725 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 MARK2Q7KZI7 788 aaKnown RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 DSELQ8IZU8 1212 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 GLMNQ92990 594 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 MAGED4Q96JG8 741 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 BDH2Q9BUT1 245 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 OPTCQ9UBM4 332 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 MYRFQ9Y2G1 1151 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 A0A0G2JLL6 359 aaPredicted RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 C1orf232A0A0U1RR37 186 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 SMIM31A0A1B0GVY4 71 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 CCDC189A1A4V9 331 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 FAM149AA5PLN7 773 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 KPNA3O00505 521 aaPredicted RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 DEAF1O75398 565 aaPredicted RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 RPL9P32969 192 aaKnown RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 NEK3P51956 506 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 KPNA1P52294 538 aaPredicted RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 DGCR6Q14129 220 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 AP5B1Q2VPB7 878 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 TRIM60Q495X7 471 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 KCTD21Q4G0X4 260 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 PPP1R15BQ5SWA1 713 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 DCLRE1AQ6PJP8 1040 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 C6orf89Q6UWU4 347 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 PRRT2Q7Z6L0 340 aaPredicted RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 ZNF554Q86TJ5 538 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 SAPCD2Q86UD0 394 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 PARP8Q8N3A8 854 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 WDTC1Q8N5D0 677 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 ITFG1Q8TB96 612 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 UTP15Q8TED0 518 aaKnown RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 MOCOSQ96EN8 888 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 AP4B1Q9Y6B7 739 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 TBX10O75333 385 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 ALDH9A1P49189 494 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 TUFMP49411 452 aaKnown RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 LSM12Q3MHD2 195 aaKnown RBP11.76□□□□□ -0.53
SYNPO-204ENST00000519664 TIGD5Q53EQ6 642 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 MTX3Q5HYI7 312 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 HECTD3Q5T447 861 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 GCNT7Q6ZNI0 430 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 C7orf43Q8WVR3 580 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 C17orf50Q8WW18 174 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 FTHL17Q9BXU8 183 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 SPAG4Q9NPE6 437 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 CDH22Q9UJ99 828 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 GIT1Q9Y2X7 761 aa11.76□□□□□ -0.53
SYNPO-204ENST00000519664 DYTNA2CJ06 578 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 OR51F1A6NGY5 319 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 AZIN1O14977 448 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 ASGR1P07306 291 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms