RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ADRA1BP35368 520 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 SOX11P35716 441 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 ARL4AP40617 200 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 CENPAP49450 140 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 VSNL1P62760 191 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 SLC26A9Q7LBE3 791 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 MARCH9Q86YJ5 346 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 NDUFAF2Q8N183 169 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 SH2D3CQ8N5H7 860 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 IPCEF1Q8WWN9 437 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 PMEPA1Q969W9 287 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 ACDQ96AP0 544 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 CDK5RAP1Q96SZ6 601 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 ETNK2Q9NVF9 386 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 HBS1LQ9Y450 684 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 MAGEA13PA6NCF6 341 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 J3KR12 359 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 EIF3HO15372 352 aaKnown RBP eCLIP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 RASA4O43374 803 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 ATP6V1G2O95670 118 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 APBB3O95704 486 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 ERFP50548 548 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 NRLP54845 237 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 RHOAP61586 193 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 RASA2Q15283 850 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 CEP78Q5JTW2 689 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 AADACL2Q6P093 401 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 RFX6Q8HWS3 928 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 VSTM4Q8IW00 320 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 RNF10Q8N5U6 811 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 GOLM1Q8NBJ4 401 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 PLD4Q96BZ4 506 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 MRGPRX1Q96LB2 322 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 DDX50Q9BQ39 737 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 KCTD5Q9NXV2 234 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 GGT7Q9UJ14 662 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 MAFFQ9ULX9 164 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 UNC13CQ8NB66 2214 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 TRBV23OR9-2A0A075B6M9 112 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 H0Y8X5 98 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 BUD23O43709 281 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 PALMO75781 387 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 EIF2B2P49770 351 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 CLDN2P57739 230 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 GSDMDP57764 484 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 MRPS25P82663 173 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 FZD5Q13467 585 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 EOGTQ5NDL2 527 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 FBXL19Q6PCT2 694 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 CYP2U1Q7Z449 544 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 MAATS1Q7Z4T9 603 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 MAML2Q8IZL2 1156 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 NAF1Q96HR8 494 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 KLC2Q9H0B6 622 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 C6orf106Q9H6K1 298 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 PNPLA8Q9NP80 782 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 ASNSD1Q9NWL6 643 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 FARP1Q9Y4F1 1045 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 A0A1B0GVM2 712 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 TCAF2A6NFQ2 919 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 C4orf47A7E2U8 309 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 OPHN1O60890 802 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 DAB1O75553 588 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 PIGNO95427 931 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 KRT1P04264 644 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 KRT7P08729 469 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 ZCCHC18P0CG32 403 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 CTPS1P17812 591 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 CXCR5P32302 372 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 JAM2P57087 298 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 AP1B1Q10567 949 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 NPNTQ6UXI9 565 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 MARK2Q7KZI7 788 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 TSEN2Q8NCE0 465 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 GALNT6Q8NCL4 622 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 SLC35G2Q8TBE7 412 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 RUBCNQ92622 972 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 HMCESQ96FZ2 354 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 POM121Q96HA1 1249 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 SPACA7Q96KW9 195 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 FANCFQ9NPI8 374 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 VPS51Q9UID3 782 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 PCDHGC3Q9UN70 934 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 TRIM33Q9UPN9 1127 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 TMED5Q9Y3A6 229 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 H3BUI4 141 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 FFAR2O15552 330 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 MFAP3LO75121 409 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 MTRF1O75570 445 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 SLC2A3P11169 496 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 TCF3P15923 654 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 ERCC2P18074 760 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 IL1R2P27930 398 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 INHBCP55103 352 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 TLDC1Q6P9B6 456 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 NCEH1Q6PIU2 408 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 DPY19L3Q6ZPD9 716 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 GRAMD2AQ8IUY3 354 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 FNIP1Q8TF40 1166 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 APOL2Q9BQE5 337 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms